Experiment: HBM-Sucrose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS00520 and LU632_RS00525 are separated by 70 nucleotides LU632_RS00525 and LU632_RS00530 are separated by 663 nucleotides
LU632_RS00520: LU632_RS00520 - hypothetical protein, at 106,376 to 107,581
_RS00520
LU632_RS00525: LU632_RS00525 - IpaD/SipD/SspD family type III secretion system needle tip protein, at 107,652 to 108,830
_RS00525
LU632_RS00530: LU632_RS00530 - hypothetical protein, at 109,494 to 113,189
_RS00530
Position (kb) 107
108
109 Strain fitness (log2 ratio) -2
-1
0
1
2 at 106.683 kb on + strand, within LU632_RS00520 at 106.684 kb on - strand, within LU632_RS00520 at 106.684 kb on - strand, within LU632_RS00520 at 106.738 kb on + strand, within LU632_RS00520 at 106.752 kb on + strand, within LU632_RS00520 at 106.758 kb on + strand, within LU632_RS00520 at 106.774 kb on + strand, within LU632_RS00520 at 106.793 kb on + strand, within LU632_RS00520 at 106.793 kb on + strand, within LU632_RS00520 at 106.794 kb on - strand, within LU632_RS00520 at 106.794 kb on - strand, within LU632_RS00520 at 106.862 kb on - strand, within LU632_RS00520 at 106.927 kb on + strand, within LU632_RS00520 at 106.927 kb on + strand, within LU632_RS00520 at 106.928 kb on - strand, within LU632_RS00520 at 106.931 kb on - strand, within LU632_RS00520 at 106.992 kb on + strand, within LU632_RS00520 at 106.992 kb on + strand, within LU632_RS00520 at 107.011 kb on + strand, within LU632_RS00520 at 107.011 kb on + strand, within LU632_RS00520 at 107.012 kb on - strand, within LU632_RS00520 at 107.060 kb on - strand, within LU632_RS00520 at 107.062 kb on + strand, within LU632_RS00520 at 107.065 kb on + strand, within LU632_RS00520 at 107.065 kb on + strand, within LU632_RS00520 at 107.134 kb on + strand, within LU632_RS00520 at 107.236 kb on - strand, within LU632_RS00520 at 108.250 kb on - strand, within LU632_RS00525 at 108.373 kb on + strand, within LU632_RS00525 at 108.453 kb on - strand, within LU632_RS00525 at 108.529 kb on + strand, within LU632_RS00525 at 108.549 kb on + strand, within LU632_RS00525 at 108.702 kb on - strand, within LU632_RS00525 at 108.741 kb on - strand at 108.750 kb on - strand at 108.912 kb on + strand at 109.312 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-Sucrose remove 106,683 + LU632_RS00520 0.25 +0.2 106,684 - LU632_RS00520 0.26 -0.5 106,684 - LU632_RS00520 0.26 +0.4 106,738 + LU632_RS00520 0.30 +0.2 106,752 + LU632_RS00520 0.31 +1.3 106,758 + LU632_RS00520 0.32 -0.5 106,774 + LU632_RS00520 0.33 +1.1 106,793 + LU632_RS00520 0.35 -0.3 106,793 + LU632_RS00520 0.35 -1.5 106,794 - LU632_RS00520 0.35 +0.3 106,794 - LU632_RS00520 0.35 -1.9 106,862 - LU632_RS00520 0.40 -0.5 106,927 + LU632_RS00520 0.46 -0.1 106,927 + LU632_RS00520 0.46 +1.8 106,928 - LU632_RS00520 0.46 -0.1 106,931 - LU632_RS00520 0.46 -0.5 106,992 + LU632_RS00520 0.51 +1.1 106,992 + LU632_RS00520 0.51 +0.9 107,011 + LU632_RS00520 0.53 +0.1 107,011 + LU632_RS00520 0.53 -0.7 107,012 - LU632_RS00520 0.53 -2.1 107,060 - LU632_RS00520 0.57 +0.2 107,062 + LU632_RS00520 0.57 +0.4 107,065 + LU632_RS00520 0.57 +0.2 107,065 + LU632_RS00520 0.57 +0.4 107,134 + LU632_RS00520 0.63 -0.5 107,236 - LU632_RS00520 0.71 +0.0 108,250 - LU632_RS00525 0.51 -0.8 108,373 + LU632_RS00525 0.61 -0.3 108,453 - LU632_RS00525 0.68 +0.1 108,529 + LU632_RS00525 0.74 -0.2 108,549 + LU632_RS00525 0.76 +0.4 108,702 - LU632_RS00525 0.89 +1.1 108,741 - -0.7 108,750 - -0.1 108,912 + +0.2 109,312 + +0.1
Or see this region's nucleotide sequence