Experiment: Bas48
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03883 and ECD_r00020 are separated by 616 nucleotides ECD_r00020 and ECD_t00078 are separated by 85 nucleotides ECD_t00078 and ECD_r00021 are separated by 184 nucleotides
ECD_03883: ECD_03883 - IMP cyclohydrolase and phosphoribosylaminoimidazolecarboxamide formyltransferase, at 4,113,968 to 4,115,557
_03883
ECD_r00020: ECD_r00020 - 16S ribosomal RNA, at 4,116,174 to 4,117,715
_r00020
ECD_t00078: ECD_t00078 - tRNA-Glu, at 4,117,801 to 4,117,876
_t00078
ECD_r00021: ECD_r00021 - 23S ribosomal RNA, at 4,118,061 to 4,120,966
_r00021
Position (kb)
4116
4117
4118 Strain fitness (log2 ratio)
-1
0
1 at 4115.333 kb on + strand, within ECD_03883 at 4115.333 kb on + strand, within ECD_03883 at 4115.333 kb on + strand, within ECD_03883 at 4115.333 kb on + strand, within ECD_03883 at 4115.334 kb on - strand, within ECD_03883 at 4115.426 kb on + strand at 4115.427 kb on - strand at 4115.560 kb on + strand at 4115.560 kb on + strand at 4115.561 kb on - strand at 4115.580 kb on - strand at 4115.580 kb on - strand at 4115.580 kb on - strand at 4115.583 kb on - strand at 4115.583 kb on - strand at 4115.583 kb on - strand at 4115.583 kb on - strand at 4115.795 kb on + strand at 4115.795 kb on + strand at 4115.877 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas48 remove 4,115,333 + ECD_03883 0.86 -0.1 4,115,333 + ECD_03883 0.86 -0.5 4,115,333 + ECD_03883 0.86 -0.7 4,115,333 + ECD_03883 0.86 +0.6 4,115,334 - ECD_03883 0.86 -0.2 4,115,426 + -0.0 4,115,427 - -1.4 4,115,560 + -0.2 4,115,560 + +0.3 4,115,561 - -0.8 4,115,580 - -0.3 4,115,580 - -0.2 4,115,580 - +1.2 4,115,583 - +0.6 4,115,583 - -0.6 4,115,583 - -1.3 4,115,583 - -0.2 4,115,795 + -0.4 4,115,795 + -0.2 4,115,877 - +0.4
Or see this region's nucleotide sequence