Strain Fitness in Escherichia coli BL21 around ECD_04342

Experiment: Bas48

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_04289 and ECD_04342 are separated by 360 nucleotidesECD_04342 and ECD_02414 are separated by 344 nucleotides ECD_04289: ECD_04289 - transposase, at 2,518,421 to 2,519,260 _04289 ECD_04342: ECD_04342 - hypothetical protein, at 2,519,621 to 2,519,737 _04342 ECD_02414: ECD_02414 - rhodanase-like enzyme, sulfur transfer from thiosulfate, at 2,520,082 to 2,520,858 _02414 Position (kb) 2519 2520Strain fitness (log2 ratio) -1 0 1at 2519.354 kb on - strandat 2519.522 kb on - strandat 2519.672 kb on - strand, within ECD_04342at 2519.672 kb on - strand, within ECD_04342at 2519.672 kb on - strand, within ECD_04342at 2519.680 kb on - strand, within ECD_04342at 2519.680 kb on - strand, within ECD_04342at 2519.683 kb on - strand, within ECD_04342at 2519.819 kb on - strandat 2519.988 kb on + strandat 2519.989 kb on - strandat 2520.711 kb on + strand, within ECD_02414

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas48
remove
2,519,354 - +0.5
2,519,522 - -0.4
2,519,672 - ECD_04342 0.44 -0.2
2,519,672 - ECD_04342 0.44 +0.3
2,519,672 - ECD_04342 0.44 +0.4
2,519,680 - ECD_04342 0.50 +0.3
2,519,680 - ECD_04342 0.50 +1.6
2,519,683 - ECD_04342 0.53 +0.2
2,519,819 - -0.7
2,519,988 + -0.0
2,519,989 - +0.3
2,520,711 + ECD_02414 0.81 -0.2

Or see this region's nucleotide sequence