Experiment: Bas48
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03475 and ECD_03476 are separated by 213 nucleotides ECD_03476 and ECD_03477 are separated by 9 nucleotides
ECD_03475: ECD_03475 - glycine C-acetyltransferase, at 3,660,556 to 3,661,752
_03475
ECD_03476: ECD_03476 - ADP-L-glycero-D-mannoheptose-6-epimerase, NAD(P)-binding, at 3,661,966 to 3,662,898
_03476
ECD_03477: ECD_03477 - ADP-heptose:LPS heptosyltransferase II, at 3,662,908 to 3,663,954
_03477
Position (kb)
3661
3662
3663 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3660.993 kb on + strand, within ECD_03475 at 3660.996 kb on - strand, within ECD_03475 at 3661.070 kb on + strand, within ECD_03475 at 3661.071 kb on - strand, within ECD_03475 at 3661.126 kb on + strand, within ECD_03475 at 3661.126 kb on + strand, within ECD_03475 at 3661.145 kb on + strand, within ECD_03475 at 3661.145 kb on + strand, within ECD_03475 at 3661.146 kb on - strand, within ECD_03475 at 3661.146 kb on - strand, within ECD_03475 at 3661.149 kb on + strand, within ECD_03475 at 3661.149 kb on + strand, within ECD_03475 at 3661.150 kb on - strand, within ECD_03475 at 3661.150 kb on - strand, within ECD_03475 at 3661.150 kb on - strand, within ECD_03475 at 3661.150 kb on - strand, within ECD_03475 at 3661.282 kb on - strand, within ECD_03475 at 3661.309 kb on - strand, within ECD_03475 at 3661.335 kb on + strand, within ECD_03475 at 3661.336 kb on - strand, within ECD_03475 at 3661.338 kb on + strand, within ECD_03475 at 3661.366 kb on - strand, within ECD_03475 at 3661.431 kb on - strand, within ECD_03475 at 3661.598 kb on + strand, within ECD_03475 at 3661.598 kb on + strand, within ECD_03475 at 3661.598 kb on + strand, within ECD_03475 at 3661.599 kb on - strand, within ECD_03475 at 3661.599 kb on - strand, within ECD_03475 at 3661.648 kb on - strand at 3661.648 kb on - strand at 3661.648 kb on - strand at 3661.668 kb on + strand at 3661.669 kb on - strand at 3661.669 kb on - strand at 3661.669 kb on - strand at 3661.786 kb on + strand at 3661.786 kb on + strand at 3661.786 kb on + strand at 3661.787 kb on - strand at 3661.787 kb on - strand at 3661.787 kb on - strand at 3661.787 kb on - strand at 3661.801 kb on + strand at 3661.802 kb on - strand at 3661.851 kb on + strand at 3661.851 kb on + strand at 3661.852 kb on - strand at 3661.906 kb on + strand at 3661.911 kb on + strand at 3661.911 kb on + strand at 3661.917 kb on + strand at 3661.917 kb on + strand at 3661.917 kb on + strand at 3661.947 kb on + strand at 3663.266 kb on + strand, within ECD_03477 at 3663.511 kb on + strand, within ECD_03477
Per-strain Table
Position Strand Gene LocusTag Fraction Bas48 remove 3,660,993 + ECD_03475 0.37 +0.2 3,660,996 - ECD_03475 0.37 +0.7 3,661,070 + ECD_03475 0.43 +0.6 3,661,071 - ECD_03475 0.43 -0.7 3,661,126 + ECD_03475 0.48 -1.1 3,661,126 + ECD_03475 0.48 -0.0 3,661,145 + ECD_03475 0.49 -0.4 3,661,145 + ECD_03475 0.49 -0.1 3,661,146 - ECD_03475 0.49 +0.1 3,661,146 - ECD_03475 0.49 -0.3 3,661,149 + ECD_03475 0.50 +0.4 3,661,149 + ECD_03475 0.50 +0.4 3,661,150 - ECD_03475 0.50 +0.5 3,661,150 - ECD_03475 0.50 -1.9 3,661,150 - ECD_03475 0.50 -0.6 3,661,150 - ECD_03475 0.50 +0.5 3,661,282 - ECD_03475 0.61 +0.7 3,661,309 - ECD_03475 0.63 +1.6 3,661,335 + ECD_03475 0.65 -0.1 3,661,336 - ECD_03475 0.65 -0.6 3,661,338 + ECD_03475 0.65 -1.1 3,661,366 - ECD_03475 0.68 -0.8 3,661,431 - ECD_03475 0.73 -0.9 3,661,598 + ECD_03475 0.87 +1.2 3,661,598 + ECD_03475 0.87 -1.3 3,661,598 + ECD_03475 0.87 -0.7 3,661,599 - ECD_03475 0.87 -1.1 3,661,599 - ECD_03475 0.87 -0.4 3,661,648 - -0.6 3,661,648 - -0.5 3,661,648 - -0.3 3,661,668 + -0.6 3,661,669 - +0.8 3,661,669 - -1.4 3,661,669 - -1.2 3,661,786 + -0.1 3,661,786 + -0.6 3,661,786 + -1.9 3,661,787 - -0.7 3,661,787 - +0.4 3,661,787 - -0.3 3,661,787 - -0.3 3,661,801 + -1.2 3,661,802 - -0.2 3,661,851 + -0.8 3,661,851 + -0.6 3,661,852 - +0.4 3,661,906 + +0.1 3,661,911 + +0.2 3,661,911 + +0.6 3,661,917 + -0.8 3,661,917 + -0.5 3,661,917 + +1.1 3,661,947 + +2.1 3,663,266 + ECD_03477 0.34 +3.0 3,663,511 + ECD_03477 0.58 +0.9
Or see this region's nucleotide sequence