Strain Fitness in Escherichia coli BL21 around ECD_03412

Experiment: Bas48

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03411 and ECD_03412 are separated by 94 nucleotidesECD_03412 and ECD_03413 are separated by 174 nucleotides ECD_03411: ECD_03411 - glycine tRNA synthetase, alpha subunit, at 3,586,561 to 3,587,472 _03411 ECD_03412: ECD_03412 - uncharacterized protein, at 3,587,567 to 3,587,866 _03412 ECD_03413: ECD_03413 - O-acetyltransferase for enterobacterial common antigen (ECA), at 3,588,041 to 3,589,036 _03413 Position (kb) 3587 3588Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3586.567 kb on - strandat 3586.567 kb on - strandat 3587.539 kb on + strandat 3587.540 kb on - strandat 3587.540 kb on - strandat 3587.540 kb on - strandat 3587.545 kb on - strandat 3587.639 kb on - strand, within ECD_03412at 3587.655 kb on + strand, within ECD_03412at 3587.809 kb on + strand, within ECD_03412at 3587.809 kb on + strand, within ECD_03412at 3587.822 kb on + strand, within ECD_03412at 3587.822 kb on + strand, within ECD_03412at 3587.823 kb on - strand, within ECD_03412at 3587.823 kb on - strand, within ECD_03412at 3587.823 kb on - strand, within ECD_03412at 3587.904 kb on + strandat 3587.904 kb on + strandat 3587.904 kb on + strandat 3587.905 kb on - strandat 3587.912 kb on + strandat 3587.914 kb on + strandat 3587.914 kb on + strandat 3587.914 kb on + strandat 3587.925 kb on - strandat 3587.930 kb on - strandat 3587.949 kb on + strandat 3587.964 kb on + strandat 3587.977 kb on - strandat 3588.028 kb on + strandat 3588.122 kb on + strandat 3588.122 kb on + strandat 3588.123 kb on - strandat 3588.139 kb on + strandat 3588.140 kb on - strandat 3588.283 kb on - strand, within ECD_03413at 3588.283 kb on - strand, within ECD_03413at 3588.317 kb on + strand, within ECD_03413at 3588.328 kb on - strand, within ECD_03413at 3588.332 kb on - strand, within ECD_03413at 3588.351 kb on + strand, within ECD_03413at 3588.386 kb on + strand, within ECD_03413at 3588.393 kb on + strand, within ECD_03413at 3588.394 kb on - strand, within ECD_03413at 3588.394 kb on - strand, within ECD_03413at 3588.422 kb on + strand, within ECD_03413at 3588.422 kb on + strand, within ECD_03413at 3588.486 kb on + strand, within ECD_03413at 3588.496 kb on + strand, within ECD_03413at 3588.497 kb on - strand, within ECD_03413at 3588.561 kb on + strand, within ECD_03413at 3588.561 kb on + strand, within ECD_03413at 3588.561 kb on + strand, within ECD_03413at 3588.561 kb on + strand, within ECD_03413at 3588.561 kb on + strand, within ECD_03413at 3588.561 kb on + strand, within ECD_03413at 3588.561 kb on + strand, within ECD_03413at 3588.561 kb on + strand, within ECD_03413at 3588.561 kb on + strand, within ECD_03413at 3588.562 kb on - strand, within ECD_03413at 3588.562 kb on - strand, within ECD_03413at 3588.562 kb on - strand, within ECD_03413at 3588.564 kb on - strand, within ECD_03413at 3588.564 kb on - strand, within ECD_03413at 3588.565 kb on + strand, within ECD_03413at 3588.566 kb on - strand, within ECD_03413at 3588.566 kb on - strand, within ECD_03413at 3588.566 kb on - strand, within ECD_03413at 3588.587 kb on + strand, within ECD_03413at 3588.618 kb on + strand, within ECD_03413at 3588.619 kb on - strand, within ECD_03413at 3588.708 kb on + strand, within ECD_03413at 3588.708 kb on + strand, within ECD_03413at 3588.708 kb on + strand, within ECD_03413at 3588.709 kb on - strand, within ECD_03413at 3588.709 kb on - strand, within ECD_03413at 3588.709 kb on - strand, within ECD_03413at 3588.709 kb on - strand, within ECD_03413at 3588.709 kb on - strand, within ECD_03413at 3588.710 kb on + strand, within ECD_03413at 3588.755 kb on + strand, within ECD_03413at 3588.755 kb on + strand, within ECD_03413at 3588.826 kb on + strand, within ECD_03413

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas48
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3,586,567 - -1.3
3,586,567 - +0.1
3,587,539 + -0.0
3,587,540 - +1.1
3,587,540 - -0.3
3,587,540 - -0.1
3,587,545 - +0.5
3,587,639 - ECD_03412 0.24 -0.7
3,587,655 + ECD_03412 0.29 -0.6
3,587,809 + ECD_03412 0.81 -0.2
3,587,809 + ECD_03412 0.81 -0.7
3,587,822 + ECD_03412 0.85 -0.2
3,587,822 + ECD_03412 0.85 -0.1
3,587,823 - ECD_03412 0.85 +0.3
3,587,823 - ECD_03412 0.85 -0.3
3,587,823 - ECD_03412 0.85 -2.7
3,587,904 + +0.1
3,587,904 + +0.1
3,587,904 + -0.2
3,587,905 - -0.1
3,587,912 + +0.1
3,587,914 + -0.2
3,587,914 + +0.0
3,587,914 + +0.1
3,587,925 - +0.7
3,587,930 - -0.4
3,587,949 + +0.4
3,587,964 + -0.6
3,587,977 - +0.2
3,588,028 + +0.9
3,588,122 + -0.4
3,588,122 + -0.7
3,588,123 - +0.5
3,588,139 + +1.8
3,588,140 - -0.8
3,588,283 - ECD_03413 0.24 -0.7
3,588,283 - ECD_03413 0.24 -0.8
3,588,317 + ECD_03413 0.28 -0.3
3,588,328 - ECD_03413 0.29 +0.1
3,588,332 - ECD_03413 0.29 -0.9
3,588,351 + ECD_03413 0.31 -2.8
3,588,386 + ECD_03413 0.35 +0.3
3,588,393 + ECD_03413 0.35 +0.0
3,588,394 - ECD_03413 0.35 +0.6
3,588,394 - ECD_03413 0.35 +0.5
3,588,422 + ECD_03413 0.38 -1.2
3,588,422 + ECD_03413 0.38 -0.4
3,588,486 + ECD_03413 0.45 -0.2
3,588,496 + ECD_03413 0.46 -0.0
3,588,497 - ECD_03413 0.46 -0.1
3,588,561 + ECD_03413 0.52 +0.5
3,588,561 + ECD_03413 0.52 +1.0
3,588,561 + ECD_03413 0.52 +0.1
3,588,561 + ECD_03413 0.52 -0.2
3,588,561 + ECD_03413 0.52 -0.3
3,588,561 + ECD_03413 0.52 +0.0
3,588,561 + ECD_03413 0.52 -0.2
3,588,561 + ECD_03413 0.52 +0.5
3,588,561 + ECD_03413 0.52 -0.5
3,588,562 - ECD_03413 0.52 -0.1
3,588,562 - ECD_03413 0.52 -0.2
3,588,562 - ECD_03413 0.52 +0.1
3,588,564 - ECD_03413 0.53 -0.6
3,588,564 - ECD_03413 0.53 -0.5
3,588,565 + ECD_03413 0.53 +0.6
3,588,566 - ECD_03413 0.53 +0.1
3,588,566 - ECD_03413 0.53 -0.1
3,588,566 - ECD_03413 0.53 +0.5
3,588,587 + ECD_03413 0.55 +0.8
3,588,618 + ECD_03413 0.58 +0.7
3,588,619 - ECD_03413 0.58 +0.3
3,588,708 + ECD_03413 0.67 +0.5
3,588,708 + ECD_03413 0.67 +0.1
3,588,708 + ECD_03413 0.67 +0.1
3,588,709 - ECD_03413 0.67 -1.7
3,588,709 - ECD_03413 0.67 +0.1
3,588,709 - ECD_03413 0.67 +0.8
3,588,709 - ECD_03413 0.67 +0.7
3,588,709 - ECD_03413 0.67 +1.2
3,588,710 + ECD_03413 0.67 +0.3
3,588,755 + ECD_03413 0.72 +0.0
3,588,755 + ECD_03413 0.72 -0.1
3,588,826 + ECD_03413 0.79 -0.7

Or see this region's nucleotide sequence