Experiment: Bas48
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03411 and ECD_03412 are separated by 94 nucleotides ECD_03412 and ECD_03413 are separated by 174 nucleotides
ECD_03411: ECD_03411 - glycine tRNA synthetase, alpha subunit, at 3,586,561 to 3,587,472
_03411
ECD_03412: ECD_03412 - uncharacterized protein, at 3,587,567 to 3,587,866
_03412
ECD_03413: ECD_03413 - O-acetyltransferase for enterobacterial common antigen (ECA), at 3,588,041 to 3,589,036
_03413
Position (kb)
3587
3588 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3586.567 kb on - strand at 3586.567 kb on - strand at 3587.539 kb on + strand at 3587.540 kb on - strand at 3587.540 kb on - strand at 3587.540 kb on - strand at 3587.545 kb on - strand at 3587.639 kb on - strand, within ECD_03412 at 3587.655 kb on + strand, within ECD_03412 at 3587.809 kb on + strand, within ECD_03412 at 3587.809 kb on + strand, within ECD_03412 at 3587.822 kb on + strand, within ECD_03412 at 3587.822 kb on + strand, within ECD_03412 at 3587.823 kb on - strand, within ECD_03412 at 3587.823 kb on - strand, within ECD_03412 at 3587.823 kb on - strand, within ECD_03412 at 3587.904 kb on + strand at 3587.904 kb on + strand at 3587.904 kb on + strand at 3587.905 kb on - strand at 3587.912 kb on + strand at 3587.914 kb on + strand at 3587.914 kb on + strand at 3587.914 kb on + strand at 3587.925 kb on - strand at 3587.930 kb on - strand at 3587.949 kb on + strand at 3587.964 kb on + strand at 3587.977 kb on - strand at 3588.028 kb on + strand at 3588.122 kb on + strand at 3588.122 kb on + strand at 3588.123 kb on - strand at 3588.139 kb on + strand at 3588.140 kb on - strand at 3588.283 kb on - strand, within ECD_03413 at 3588.283 kb on - strand, within ECD_03413 at 3588.317 kb on + strand, within ECD_03413 at 3588.328 kb on - strand, within ECD_03413 at 3588.332 kb on - strand, within ECD_03413 at 3588.351 kb on + strand, within ECD_03413 at 3588.386 kb on + strand, within ECD_03413 at 3588.393 kb on + strand, within ECD_03413 at 3588.394 kb on - strand, within ECD_03413 at 3588.394 kb on - strand, within ECD_03413 at 3588.422 kb on + strand, within ECD_03413 at 3588.422 kb on + strand, within ECD_03413 at 3588.486 kb on + strand, within ECD_03413 at 3588.496 kb on + strand, within ECD_03413 at 3588.497 kb on - strand, within ECD_03413 at 3588.561 kb on + strand, within ECD_03413 at 3588.561 kb on + strand, within ECD_03413 at 3588.561 kb on + strand, within ECD_03413 at 3588.561 kb on + strand, within ECD_03413 at 3588.561 kb on + strand, within ECD_03413 at 3588.561 kb on + strand, within ECD_03413 at 3588.561 kb on + strand, within ECD_03413 at 3588.561 kb on + strand, within ECD_03413 at 3588.561 kb on + strand, within ECD_03413 at 3588.562 kb on - strand, within ECD_03413 at 3588.562 kb on - strand, within ECD_03413 at 3588.562 kb on - strand, within ECD_03413 at 3588.564 kb on - strand, within ECD_03413 at 3588.564 kb on - strand, within ECD_03413 at 3588.565 kb on + strand, within ECD_03413 at 3588.566 kb on - strand, within ECD_03413 at 3588.566 kb on - strand, within ECD_03413 at 3588.566 kb on - strand, within ECD_03413 at 3588.587 kb on + strand, within ECD_03413 at 3588.618 kb on + strand, within ECD_03413 at 3588.619 kb on - strand, within ECD_03413 at 3588.708 kb on + strand, within ECD_03413 at 3588.708 kb on + strand, within ECD_03413 at 3588.708 kb on + strand, within ECD_03413 at 3588.709 kb on - strand, within ECD_03413 at 3588.709 kb on - strand, within ECD_03413 at 3588.709 kb on - strand, within ECD_03413 at 3588.709 kb on - strand, within ECD_03413 at 3588.709 kb on - strand, within ECD_03413 at 3588.710 kb on + strand, within ECD_03413 at 3588.755 kb on + strand, within ECD_03413 at 3588.755 kb on + strand, within ECD_03413 at 3588.826 kb on + strand, within ECD_03413
Per-strain Table
Position Strand Gene LocusTag Fraction Bas48 remove 3,586,567 - -1.3 3,586,567 - +0.1 3,587,539 + -0.0 3,587,540 - +1.1 3,587,540 - -0.3 3,587,540 - -0.1 3,587,545 - +0.5 3,587,639 - ECD_03412 0.24 -0.7 3,587,655 + ECD_03412 0.29 -0.6 3,587,809 + ECD_03412 0.81 -0.2 3,587,809 + ECD_03412 0.81 -0.7 3,587,822 + ECD_03412 0.85 -0.2 3,587,822 + ECD_03412 0.85 -0.1 3,587,823 - ECD_03412 0.85 +0.3 3,587,823 - ECD_03412 0.85 -0.3 3,587,823 - ECD_03412 0.85 -2.7 3,587,904 + +0.1 3,587,904 + +0.1 3,587,904 + -0.2 3,587,905 - -0.1 3,587,912 + +0.1 3,587,914 + -0.2 3,587,914 + +0.0 3,587,914 + +0.1 3,587,925 - +0.7 3,587,930 - -0.4 3,587,949 + +0.4 3,587,964 + -0.6 3,587,977 - +0.2 3,588,028 + +0.9 3,588,122 + -0.4 3,588,122 + -0.7 3,588,123 - +0.5 3,588,139 + +1.8 3,588,140 - -0.8 3,588,283 - ECD_03413 0.24 -0.7 3,588,283 - ECD_03413 0.24 -0.8 3,588,317 + ECD_03413 0.28 -0.3 3,588,328 - ECD_03413 0.29 +0.1 3,588,332 - ECD_03413 0.29 -0.9 3,588,351 + ECD_03413 0.31 -2.8 3,588,386 + ECD_03413 0.35 +0.3 3,588,393 + ECD_03413 0.35 +0.0 3,588,394 - ECD_03413 0.35 +0.6 3,588,394 - ECD_03413 0.35 +0.5 3,588,422 + ECD_03413 0.38 -1.2 3,588,422 + ECD_03413 0.38 -0.4 3,588,486 + ECD_03413 0.45 -0.2 3,588,496 + ECD_03413 0.46 -0.0 3,588,497 - ECD_03413 0.46 -0.1 3,588,561 + ECD_03413 0.52 +0.5 3,588,561 + ECD_03413 0.52 +1.0 3,588,561 + ECD_03413 0.52 +0.1 3,588,561 + ECD_03413 0.52 -0.2 3,588,561 + ECD_03413 0.52 -0.3 3,588,561 + ECD_03413 0.52 +0.0 3,588,561 + ECD_03413 0.52 -0.2 3,588,561 + ECD_03413 0.52 +0.5 3,588,561 + ECD_03413 0.52 -0.5 3,588,562 - ECD_03413 0.52 -0.1 3,588,562 - ECD_03413 0.52 -0.2 3,588,562 - ECD_03413 0.52 +0.1 3,588,564 - ECD_03413 0.53 -0.6 3,588,564 - ECD_03413 0.53 -0.5 3,588,565 + ECD_03413 0.53 +0.6 3,588,566 - ECD_03413 0.53 +0.1 3,588,566 - ECD_03413 0.53 -0.1 3,588,566 - ECD_03413 0.53 +0.5 3,588,587 + ECD_03413 0.55 +0.8 3,588,618 + ECD_03413 0.58 +0.7 3,588,619 - ECD_03413 0.58 +0.3 3,588,708 + ECD_03413 0.67 +0.5 3,588,708 + ECD_03413 0.67 +0.1 3,588,708 + ECD_03413 0.67 +0.1 3,588,709 - ECD_03413 0.67 -1.7 3,588,709 - ECD_03413 0.67 +0.1 3,588,709 - ECD_03413 0.67 +0.8 3,588,709 - ECD_03413 0.67 +0.7 3,588,709 - ECD_03413 0.67 +1.2 3,588,710 + ECD_03413 0.67 +0.3 3,588,755 + ECD_03413 0.72 +0.0 3,588,755 + ECD_03413 0.72 -0.1 3,588,826 + ECD_03413 0.79 -0.7
Or see this region's nucleotide sequence