Strain Fitness in Escherichia coli BL21 around ECD_03322

Experiment: Bas48

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03320 and ECD_03321 are separated by 72 nucleotidesECD_03321 and ECD_03322 are separated by 3 nucleotidesECD_03322 and ECD_03323 are separated by 131 nucleotides ECD_03320: ECD_03320 - DUF165 family inner membrane protein, at 3,471,601 to 3,472,266 _03320 ECD_03321: ECD_03321 - putative lipoprotein, at 3,472,339 to 3,472,896 _03321 ECD_03322: ECD_03322 - putative arabinose efflux transporter, at 3,472,900 to 3,474,117 _03322 ECD_03323: ECD_03323 - UPF0118 family putative transporter, at 3,474,249 to 3,475,298 _03323 Position (kb) 3472 3473 3474 3475Strain fitness (log2 ratio) -2 -1 0 1 2at 3471.955 kb on + strand, within ECD_03320at 3472.110 kb on + strand, within ECD_03320at 3472.192 kb on + strand, within ECD_03320at 3472.193 kb on - strand, within ECD_03320at 3472.209 kb on + strandat 3472.209 kb on + strandat 3472.210 kb on - strandat 3472.289 kb on + strandat 3472.353 kb on + strandat 3472.358 kb on - strandat 3472.358 kb on - strandat 3472.447 kb on - strand, within ECD_03321at 3472.509 kb on + strand, within ECD_03321at 3472.548 kb on + strand, within ECD_03321at 3472.549 kb on - strand, within ECD_03321at 3472.695 kb on + strand, within ECD_03321at 3472.740 kb on + strand, within ECD_03321at 3472.740 kb on + strand, within ECD_03321at 3472.740 kb on + strand, within ECD_03321at 3472.740 kb on + strand, within ECD_03321at 3472.741 kb on - strand, within ECD_03321at 3472.741 kb on - strand, within ECD_03321at 3472.741 kb on - strand, within ECD_03321at 3472.743 kb on + strand, within ECD_03321at 3472.743 kb on + strand, within ECD_03321at 3472.744 kb on - strand, within ECD_03321at 3472.768 kb on + strand, within ECD_03321at 3472.768 kb on + strand, within ECD_03321at 3472.875 kb on + strandat 3472.875 kb on + strandat 3472.875 kb on + strandat 3472.875 kb on + strandat 3472.878 kb on + strandat 3472.963 kb on + strandat 3472.964 kb on - strandat 3473.001 kb on - strandat 3473.074 kb on - strand, within ECD_03322at 3473.077 kb on + strand, within ECD_03322at 3473.084 kb on + strand, within ECD_03322at 3473.084 kb on + strand, within ECD_03322at 3473.084 kb on + strand, within ECD_03322at 3473.085 kb on - strand, within ECD_03322at 3473.085 kb on - strand, within ECD_03322at 3473.085 kb on - strand, within ECD_03322at 3473.182 kb on + strand, within ECD_03322at 3473.243 kb on - strand, within ECD_03322at 3473.309 kb on - strand, within ECD_03322at 3473.337 kb on + strand, within ECD_03322at 3473.338 kb on - strand, within ECD_03322at 3473.338 kb on - strand, within ECD_03322at 3473.338 kb on - strand, within ECD_03322at 3473.338 kb on - strand, within ECD_03322at 3473.377 kb on - strand, within ECD_03322at 3473.384 kb on + strand, within ECD_03322at 3473.451 kb on - strand, within ECD_03322at 3473.597 kb on + strand, within ECD_03322at 3473.597 kb on + strand, within ECD_03322at 3473.640 kb on - strand, within ECD_03322at 3473.640 kb on - strand, within ECD_03322at 3473.770 kb on + strand, within ECD_03322at 3473.773 kb on + strand, within ECD_03322at 3473.848 kb on + strand, within ECD_03322at 3473.849 kb on - strand, within ECD_03322at 3473.990 kb on + strand, within ECD_03322at 3473.991 kb on - strand, within ECD_03322at 3473.991 kb on - strand, within ECD_03322at 3473.991 kb on - strand, within ECD_03322at 3474.029 kb on + strandat 3474.043 kb on - strandat 3474.052 kb on + strandat 3474.053 kb on - strandat 3474.054 kb on + strandat 3474.054 kb on + strandat 3474.055 kb on - strandat 3474.089 kb on - strandat 3474.182 kb on + strandat 3474.221 kb on + strandat 3474.222 kb on - strandat 3474.345 kb on - strandat 3474.361 kb on + strand, within ECD_03323at 3474.443 kb on + strand, within ECD_03323at 3474.443 kb on + strand, within ECD_03323at 3474.443 kb on + strand, within ECD_03323at 3474.444 kb on - strand, within ECD_03323at 3474.451 kb on + strand, within ECD_03323at 3474.524 kb on + strand, within ECD_03323at 3474.525 kb on - strand, within ECD_03323at 3474.603 kb on - strand, within ECD_03323at 3474.650 kb on + strand, within ECD_03323at 3474.722 kb on - strand, within ECD_03323at 3474.729 kb on - strand, within ECD_03323at 3474.779 kb on + strand, within ECD_03323at 3474.805 kb on + strand, within ECD_03323at 3474.805 kb on + strand, within ECD_03323at 3474.818 kb on + strand, within ECD_03323at 3474.818 kb on + strand, within ECD_03323at 3474.819 kb on - strand, within ECD_03323at 3474.931 kb on + strand, within ECD_03323at 3474.951 kb on + strand, within ECD_03323at 3474.951 kb on + strand, within ECD_03323at 3474.951 kb on + strand, within ECD_03323at 3474.952 kb on - strand, within ECD_03323at 3474.952 kb on - strand, within ECD_03323at 3475.031 kb on + strand, within ECD_03323at 3475.031 kb on + strand, within ECD_03323at 3475.031 kb on + strand, within ECD_03323at 3475.031 kb on + strand, within ECD_03323at 3475.031 kb on + strand, within ECD_03323at 3475.054 kb on + strand, within ECD_03323at 3475.085 kb on - strand, within ECD_03323

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas48
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3,471,955 + ECD_03320 0.53 +0.1
3,472,110 + ECD_03320 0.76 +0.9
3,472,192 + ECD_03320 0.89 +1.4
3,472,193 - ECD_03320 0.89 +0.9
3,472,209 + +0.3
3,472,209 + +0.3
3,472,210 - +1.1
3,472,289 + +1.5
3,472,353 + +0.3
3,472,358 - +0.4
3,472,358 - +0.1
3,472,447 - ECD_03321 0.19 +0.7
3,472,509 + ECD_03321 0.30 -0.0
3,472,548 + ECD_03321 0.37 +0.1
3,472,549 - ECD_03321 0.38 -0.1
3,472,695 + ECD_03321 0.64 +0.0
3,472,740 + ECD_03321 0.72 +0.8
3,472,740 + ECD_03321 0.72 +0.1
3,472,740 + ECD_03321 0.72 -0.8
3,472,740 + ECD_03321 0.72 -0.1
3,472,741 - ECD_03321 0.72 -0.4
3,472,741 - ECD_03321 0.72 -0.1
3,472,741 - ECD_03321 0.72 +0.6
3,472,743 + ECD_03321 0.72 +0.6
3,472,743 + ECD_03321 0.72 -2.7
3,472,744 - ECD_03321 0.73 +0.2
3,472,768 + ECD_03321 0.77 +0.4
3,472,768 + ECD_03321 0.77 -0.1
3,472,875 + -0.4
3,472,875 + -1.0
3,472,875 + +0.9
3,472,875 + -0.1
3,472,878 + -0.1
3,472,963 + +0.5
3,472,964 - +0.9
3,473,001 - +1.8
3,473,074 - ECD_03322 0.14 -0.5
3,473,077 + ECD_03322 0.15 -0.5
3,473,084 + ECD_03322 0.15 +0.7
3,473,084 + ECD_03322 0.15 -0.3
3,473,084 + ECD_03322 0.15 -0.2
3,473,085 - ECD_03322 0.15 +1.3
3,473,085 - ECD_03322 0.15 -0.2
3,473,085 - ECD_03322 0.15 +0.1
3,473,182 + ECD_03322 0.23 -1.6
3,473,243 - ECD_03322 0.28 +0.5
3,473,309 - ECD_03322 0.34 -0.1
3,473,337 + ECD_03322 0.36 +0.6
3,473,338 - ECD_03322 0.36 -0.3
3,473,338 - ECD_03322 0.36 -0.5
3,473,338 - ECD_03322 0.36 +0.3
3,473,338 - ECD_03322 0.36 -0.3
3,473,377 - ECD_03322 0.39 +0.1
3,473,384 + ECD_03322 0.40 +0.3
3,473,451 - ECD_03322 0.45 -0.0
3,473,597 + ECD_03322 0.57 +0.1
3,473,597 + ECD_03322 0.57 -1.4
3,473,640 - ECD_03322 0.61 +0.6
3,473,640 - ECD_03322 0.61 +0.4
3,473,770 + ECD_03322 0.71 -0.4
3,473,773 + ECD_03322 0.72 -0.5
3,473,848 + ECD_03322 0.78 -0.5
3,473,849 - ECD_03322 0.78 +0.4
3,473,990 + ECD_03322 0.89 -0.9
3,473,991 - ECD_03322 0.90 +0.5
3,473,991 - ECD_03322 0.90 -0.0
3,473,991 - ECD_03322 0.90 -0.5
3,474,029 + -0.3
3,474,043 - +0.6
3,474,052 + +0.1
3,474,053 - -0.2
3,474,054 + -0.1
3,474,054 + +0.4
3,474,055 - +0.5
3,474,089 - +0.6
3,474,182 + -0.8
3,474,221 + -0.4
3,474,222 - -0.0
3,474,345 - -0.2
3,474,361 + ECD_03323 0.11 -0.4
3,474,443 + ECD_03323 0.18 -0.1
3,474,443 + ECD_03323 0.18 +0.8
3,474,443 + ECD_03323 0.18 +0.3
3,474,444 - ECD_03323 0.19 +0.2
3,474,451 + ECD_03323 0.19 -0.4
3,474,524 + ECD_03323 0.26 -0.3
3,474,525 - ECD_03323 0.26 +1.0
3,474,603 - ECD_03323 0.34 -0.7
3,474,650 + ECD_03323 0.38 -0.4
3,474,722 - ECD_03323 0.45 -0.3
3,474,729 - ECD_03323 0.46 -0.6
3,474,779 + ECD_03323 0.50 +0.4
3,474,805 + ECD_03323 0.53 +1.2
3,474,805 + ECD_03323 0.53 +0.3
3,474,818 + ECD_03323 0.54 +0.7
3,474,818 + ECD_03323 0.54 -0.5
3,474,819 - ECD_03323 0.54 +0.7
3,474,931 + ECD_03323 0.65 +0.5
3,474,951 + ECD_03323 0.67 +0.3
3,474,951 + ECD_03323 0.67 +0.3
3,474,951 + ECD_03323 0.67 -0.2
3,474,952 - ECD_03323 0.67 +0.1
3,474,952 - ECD_03323 0.67 +0.5
3,475,031 + ECD_03323 0.74 -0.7
3,475,031 + ECD_03323 0.74 +1.3
3,475,031 + ECD_03323 0.74 +0.7
3,475,031 + ECD_03323 0.74 -0.1
3,475,031 + ECD_03323 0.74 -0.5
3,475,054 + ECD_03323 0.77 -0.5
3,475,085 - ECD_03323 0.80 +0.3

Or see this region's nucleotide sequence