Experiment: Bas48
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02994 and ECD_02995 are separated by 143 nucleotides ECD_02995 and ECD_02996 are separated by 54 nucleotides ECD_02996 and ECD_02997 are separated by 248 nucleotides
ECD_02994: ECD_02994 - antitoxin of the SohA(PrlF)-YhaV toxin-antitoxin system, at 3,143,195 to 3,143,530
_02994
ECD_02995: ECD_02995 - toxin of the SohB(PrlF)-YhaV toxin-antitoxin system, at 3,143,674 to 3,143,994
_02995
ECD_02996: ECD_02996 - transcriptional repressor of the aga regulon, at 3,144,049 to 3,144,858
_02996
ECD_02997: ECD_02997 - tagatose 6-phosphate aldolase 1, kbaZ subunit, at 3,145,107 to 3,146,387
_02997
Position (kb)
3144
3145 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3143.124 kb on + strand at 3143.124 kb on + strand at 3143.125 kb on - strand at 3143.223 kb on + strand at 3143.267 kb on - strand, within ECD_02994 at 3143.292 kb on + strand, within ECD_02994 at 3143.349 kb on + strand, within ECD_02994 at 3143.349 kb on + strand, within ECD_02994 at 3143.349 kb on + strand, within ECD_02994 at 3143.350 kb on - strand, within ECD_02994 at 3143.350 kb on - strand, within ECD_02994 at 3143.350 kb on - strand, within ECD_02994 at 3143.350 kb on - strand, within ECD_02994 at 3143.353 kb on + strand, within ECD_02994 at 3143.354 kb on - strand, within ECD_02994 at 3143.354 kb on - strand, within ECD_02994 at 3143.354 kb on - strand, within ECD_02994 at 3143.386 kb on + strand, within ECD_02994 at 3143.386 kb on + strand, within ECD_02994 at 3143.387 kb on - strand, within ECD_02994 at 3143.387 kb on - strand, within ECD_02994 at 3143.387 kb on - strand, within ECD_02994 at 3143.389 kb on + strand, within ECD_02994 at 3143.389 kb on + strand, within ECD_02994 at 3143.389 kb on + strand, within ECD_02994 at 3143.389 kb on + strand, within ECD_02994 at 3143.389 kb on + strand, within ECD_02994 at 3143.390 kb on - strand, within ECD_02994 at 3143.390 kb on - strand, within ECD_02994 at 3143.565 kb on - strand at 3143.566 kb on + strand at 3143.566 kb on + strand at 3143.566 kb on + strand at 3143.567 kb on - strand at 3143.567 kb on - strand at 3143.604 kb on - strand at 3143.706 kb on + strand, within ECD_02995 at 3143.707 kb on - strand, within ECD_02995 at 3143.826 kb on + strand, within ECD_02995 at 3143.888 kb on - strand, within ECD_02995 at 3143.916 kb on - strand, within ECD_02995 at 3144.163 kb on - strand, within ECD_02996 at 3144.163 kb on - strand, within ECD_02996 at 3144.187 kb on - strand, within ECD_02996 at 3144.203 kb on - strand, within ECD_02996 at 3144.299 kb on - strand, within ECD_02996 at 3144.299 kb on - strand, within ECD_02996 at 3144.299 kb on - strand, within ECD_02996 at 3144.299 kb on - strand, within ECD_02996 at 3144.643 kb on - strand, within ECD_02996 at 3144.666 kb on - strand, within ECD_02996 at 3144.727 kb on - strand, within ECD_02996 at 3144.727 kb on - strand, within ECD_02996 at 3144.731 kb on - strand, within ECD_02996 at 3144.738 kb on - strand, within ECD_02996 at 3144.738 kb on - strand, within ECD_02996 at 3144.738 kb on - strand, within ECD_02996 at 3144.859 kb on - strand at 3144.957 kb on - strand at 3145.164 kb on + strand at 3145.165 kb on - strand at 3145.264 kb on + strand, within ECD_02997 at 3145.264 kb on + strand, within ECD_02997 at 3145.264 kb on + strand, within ECD_02997 at 3145.265 kb on - strand, within ECD_02997 at 3145.265 kb on - strand, within ECD_02997 at 3145.614 kb on + strand, within ECD_02997 at 3145.847 kb on - strand, within ECD_02997
Per-strain Table
Position Strand Gene LocusTag Fraction Bas48 remove 3,143,124 + -0.8 3,143,124 + +1.0 3,143,125 - -0.1 3,143,223 + +0.6 3,143,267 - ECD_02994 0.21 -0.1 3,143,292 + ECD_02994 0.29 -0.3 3,143,349 + ECD_02994 0.46 +0.6 3,143,349 + ECD_02994 0.46 +0.8 3,143,349 + ECD_02994 0.46 +0.2 3,143,350 - ECD_02994 0.46 +0.4 3,143,350 - ECD_02994 0.46 +0.1 3,143,350 - ECD_02994 0.46 +2.7 3,143,350 - ECD_02994 0.46 +0.5 3,143,353 + ECD_02994 0.47 +0.2 3,143,354 - ECD_02994 0.47 -1.4 3,143,354 - ECD_02994 0.47 +2.2 3,143,354 - ECD_02994 0.47 +0.1 3,143,386 + ECD_02994 0.57 +0.5 3,143,386 + ECD_02994 0.57 -2.4 3,143,387 - ECD_02994 0.57 -0.3 3,143,387 - ECD_02994 0.57 -0.1 3,143,387 - ECD_02994 0.57 -0.4 3,143,389 + ECD_02994 0.58 -0.2 3,143,389 + ECD_02994 0.58 +0.5 3,143,389 + ECD_02994 0.58 +0.4 3,143,389 + ECD_02994 0.58 -0.2 3,143,389 + ECD_02994 0.58 +0.3 3,143,390 - ECD_02994 0.58 +1.1 3,143,390 - ECD_02994 0.58 -0.1 3,143,565 - +0.1 3,143,566 + -0.2 3,143,566 + +1.3 3,143,566 + +1.1 3,143,567 - -0.6 3,143,567 - +0.2 3,143,604 - -0.5 3,143,706 + ECD_02995 0.10 -0.3 3,143,707 - ECD_02995 0.10 -0.3 3,143,826 + ECD_02995 0.47 -0.3 3,143,888 - ECD_02995 0.67 -0.8 3,143,916 - ECD_02995 0.75 +1.3 3,144,163 - ECD_02996 0.14 +1.7 3,144,163 - ECD_02996 0.14 -0.4 3,144,187 - ECD_02996 0.17 +0.2 3,144,203 - ECD_02996 0.19 -0.2 3,144,299 - ECD_02996 0.31 -0.2 3,144,299 - ECD_02996 0.31 -0.8 3,144,299 - ECD_02996 0.31 -0.8 3,144,299 - ECD_02996 0.31 -1.1 3,144,643 - ECD_02996 0.73 -1.6 3,144,666 - ECD_02996 0.76 -1.7 3,144,727 - ECD_02996 0.84 -0.3 3,144,727 - ECD_02996 0.84 -0.2 3,144,731 - ECD_02996 0.84 -1.3 3,144,738 - ECD_02996 0.85 -1.5 3,144,738 - ECD_02996 0.85 -0.8 3,144,738 - ECD_02996 0.85 +0.9 3,144,859 - -1.6 3,144,957 - -1.1 3,145,164 + +2.8 3,145,165 - +0.4 3,145,264 + ECD_02997 0.12 +0.0 3,145,264 + ECD_02997 0.12 +0.0 3,145,264 + ECD_02997 0.12 -0.4 3,145,265 - ECD_02997 0.12 +0.3 3,145,265 - ECD_02997 0.12 +0.4 3,145,614 + ECD_02997 0.40 +0.5 3,145,847 - ECD_02997 0.58 -0.2
Or see this region's nucleotide sequence