Experiment: Bas48
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02913 and ECD_02914 are separated by 373 nucleotides ECD_02914 and ECD_02915 are separated by 283 nucleotides ECD_02915 and ECD_02916 are separated by 95 nucleotides
ECD_02913: ECD_02913 - 3,4-dihydroxy-2-butanone-4-phosphate synthase, at 3,051,250 to 3,051,903
_02913
ECD_02914: ECD_02914 - BMFP family putative fusogenic protein, at 3,052,277 to 3,052,567
_02914
ECD_02915: ECD_02915 - putative fimbrial-like adhesin protein, at 3,052,851 to 3,053,402
_02915
ECD_02916: ECD_02916 - putative outer membrane usher protein, at 3,053,498 to 3,055,966
_02916
Position (kb)
3052
3053
3054 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3051.927 kb on - strand at 3051.953 kb on - strand at 3051.953 kb on - strand at 3051.967 kb on - strand at 3052.195 kb on + strand at 3052.196 kb on - strand at 3052.205 kb on + strand at 3052.216 kb on + strand at 3052.223 kb on + strand at 3052.223 kb on + strand at 3052.223 kb on + strand at 3052.237 kb on + strand at 3052.257 kb on - strand at 3052.273 kb on + strand at 3052.273 kb on + strand at 3052.274 kb on - strand at 3052.416 kb on + strand, within ECD_02914 at 3052.416 kb on + strand, within ECD_02914 at 3052.416 kb on + strand, within ECD_02914 at 3052.614 kb on + strand at 3052.976 kb on + strand, within ECD_02915 at 3053.112 kb on - strand, within ECD_02915 at 3053.279 kb on + strand, within ECD_02915 at 3053.327 kb on + strand, within ECD_02915 at 3054.034 kb on + strand, within ECD_02916 at 3054.199 kb on + strand, within ECD_02916
Per-strain Table
Position Strand Gene LocusTag Fraction Bas48 remove 3,051,927 - -0.2 3,051,953 - +0.4 3,051,953 - -0.2 3,051,967 - +1.7 3,052,195 + +1.1 3,052,196 - +0.8 3,052,205 + +3.1 3,052,216 + -0.8 3,052,223 + -0.3 3,052,223 + -1.3 3,052,223 + -1.2 3,052,237 + +1.7 3,052,257 - -1.1 3,052,273 + +0.3 3,052,273 + +0.0 3,052,274 - +1.1 3,052,416 + ECD_02914 0.48 +0.1 3,052,416 + ECD_02914 0.48 -1.7 3,052,416 + ECD_02914 0.48 -0.1 3,052,614 + +1.8 3,052,976 + ECD_02915 0.23 +2.1 3,053,112 - ECD_02915 0.47 +0.8 3,053,279 + ECD_02915 0.78 +1.2 3,053,327 + ECD_02915 0.86 +1.3 3,054,034 + ECD_02916 0.22 +0.7 3,054,199 + ECD_02916 0.28 -0.5
Or see this region's nucleotide sequence