Strain Fitness in Escherichia coli BL21 around ECD_02378

Experiment: Bas48

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02376 and ECD_02377 are separated by 14 nucleotidesECD_02377 and ECD_02378 are separated by 4 nucleotidesECD_02378 and ECD_02379 overlap by 11 nucleotides ECD_02376: ECD_02376 - hydrogenase 4, membrane subunit, at 2,469,385 to 2,470,734 _02376 ECD_02377: ECD_02377 - hydrogenase 4, membrane subunit, at 2,470,749 to 2,471,399 _02377 ECD_02378: ECD_02378 - hydrogenase 4, membrane subunit, at 2,471,404 to 2,472,984 _02378 ECD_02379: ECD_02379 - hydrogenase 4, subunit, at 2,472,974 to 2,474,641 _02379 Position (kb) 2471 2472 2473Strain fitness (log2 ratio) -2 -1 0 1at 2470.713 kb on - strandat 2470.733 kb on - strandat 2470.735 kb on + strandat 2470.735 kb on + strandat 2470.760 kb on + strandat 2470.761 kb on - strandat 2471.144 kb on - strand, within ECD_02377at 2471.284 kb on + strand, within ECD_02377at 2471.284 kb on + strand, within ECD_02377at 2471.352 kb on - strandat 2471.513 kb on + strandat 2471.514 kb on - strandat 2471.516 kb on + strandat 2471.520 kb on + strandat 2471.520 kb on + strandat 2471.520 kb on + strandat 2471.520 kb on + strandat 2471.520 kb on + strandat 2471.521 kb on - strandat 2471.521 kb on - strandat 2471.521 kb on - strandat 2471.680 kb on + strand, within ECD_02378at 2471.793 kb on + strand, within ECD_02378at 2471.802 kb on + strand, within ECD_02378at 2471.870 kb on - strand, within ECD_02378at 2471.905 kb on + strand, within ECD_02378at 2471.905 kb on + strand, within ECD_02378at 2471.913 kb on + strand, within ECD_02378at 2471.914 kb on - strand, within ECD_02378at 2472.053 kb on + strand, within ECD_02378at 2472.053 kb on + strand, within ECD_02378at 2472.220 kb on + strand, within ECD_02378at 2472.220 kb on + strand, within ECD_02378at 2472.221 kb on - strand, within ECD_02378at 2472.229 kb on - strand, within ECD_02378at 2472.229 kb on - strand, within ECD_02378at 2472.320 kb on + strand, within ECD_02378at 2472.333 kb on + strand, within ECD_02378at 2472.389 kb on + strand, within ECD_02378at 2472.390 kb on - strand, within ECD_02378at 2472.486 kb on - strand, within ECD_02378at 2472.496 kb on + strand, within ECD_02378at 2472.651 kb on + strand, within ECD_02378at 2472.651 kb on + strand, within ECD_02378at 2472.680 kb on + strand, within ECD_02378at 2472.714 kb on - strand, within ECD_02378at 2472.881 kb on + strandat 2472.881 kb on + strandat 2472.881 kb on + strandat 2472.881 kb on + strandat 2472.881 kb on + strandat 2472.881 kb on + strandat 2472.882 kb on - strandat 2473.120 kb on - strandat 2473.120 kb on - strandat 2473.186 kb on + strand, within ECD_02379at 2473.187 kb on - strand, within ECD_02379at 2473.205 kb on + strand, within ECD_02379at 2473.208 kb on + strand, within ECD_02379at 2473.209 kb on - strand, within ECD_02379at 2473.346 kb on + strand, within ECD_02379at 2473.347 kb on - strand, within ECD_02379at 2473.347 kb on - strand, within ECD_02379at 2473.414 kb on + strand, within ECD_02379at 2473.415 kb on - strand, within ECD_02379at 2473.415 kb on - strand, within ECD_02379at 2473.543 kb on + strand, within ECD_02379at 2473.544 kb on - strand, within ECD_02379at 2473.622 kb on + strand, within ECD_02379at 2473.623 kb on - strand, within ECD_02379at 2473.623 kb on - strand, within ECD_02379at 2473.733 kb on + strand, within ECD_02379at 2473.786 kb on + strand, within ECD_02379at 2473.787 kb on - strand, within ECD_02379at 2473.789 kb on + strand, within ECD_02379at 2473.790 kb on - strand, within ECD_02379

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas48
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2,470,713 - -0.0
2,470,733 - +0.6
2,470,735 + +1.1
2,470,735 + +1.1
2,470,760 + +0.5
2,470,761 - +0.9
2,471,144 - ECD_02377 0.61 +0.1
2,471,284 + ECD_02377 0.82 -0.1
2,471,284 + ECD_02377 0.82 -0.9
2,471,352 - +0.1
2,471,513 + +0.7
2,471,514 - -0.1
2,471,516 + -0.0
2,471,520 + +1.3
2,471,520 + +0.1
2,471,520 + +0.1
2,471,520 + +0.6
2,471,520 + +0.4
2,471,521 - +0.2
2,471,521 - -0.7
2,471,521 - -1.0
2,471,680 + ECD_02378 0.17 -0.1
2,471,793 + ECD_02378 0.25 -0.3
2,471,802 + ECD_02378 0.25 -2.1
2,471,870 - ECD_02378 0.29 -0.0
2,471,905 + ECD_02378 0.32 -0.3
2,471,905 + ECD_02378 0.32 -0.4
2,471,913 + ECD_02378 0.32 -0.7
2,471,914 - ECD_02378 0.32 -1.5
2,472,053 + ECD_02378 0.41 -0.3
2,472,053 + ECD_02378 0.41 +1.0
2,472,220 + ECD_02378 0.52 +0.5
2,472,220 + ECD_02378 0.52 +0.1
2,472,221 - ECD_02378 0.52 +0.2
2,472,229 - ECD_02378 0.52 +0.3
2,472,229 - ECD_02378 0.52 -0.1
2,472,320 + ECD_02378 0.58 +0.3
2,472,333 + ECD_02378 0.59 +0.0
2,472,389 + ECD_02378 0.62 +1.3
2,472,390 - ECD_02378 0.62 -0.1
2,472,486 - ECD_02378 0.68 -0.1
2,472,496 + ECD_02378 0.69 -0.4
2,472,651 + ECD_02378 0.79 +0.4
2,472,651 + ECD_02378 0.79 -1.1
2,472,680 + ECD_02378 0.81 +0.4
2,472,714 - ECD_02378 0.83 +0.1
2,472,881 + -0.1
2,472,881 + +0.3
2,472,881 + +1.1
2,472,881 + -2.5
2,472,881 + -0.3
2,472,881 + -0.3
2,472,882 - +0.1
2,473,120 - +0.1
2,473,120 - +0.7
2,473,186 + ECD_02379 0.13 +0.1
2,473,187 - ECD_02379 0.13 +0.7
2,473,205 + ECD_02379 0.14 -2.1
2,473,208 + ECD_02379 0.14 +0.4
2,473,209 - ECD_02379 0.14 +0.2
2,473,346 + ECD_02379 0.22 -2.2
2,473,347 - ECD_02379 0.22 -0.5
2,473,347 - ECD_02379 0.22 +0.4
2,473,414 + ECD_02379 0.26 +0.5
2,473,415 - ECD_02379 0.26 -0.7
2,473,415 - ECD_02379 0.26 -0.5
2,473,543 + ECD_02379 0.34 -1.2
2,473,544 - ECD_02379 0.34 +0.5
2,473,622 + ECD_02379 0.39 -0.9
2,473,623 - ECD_02379 0.39 -1.3
2,473,623 - ECD_02379 0.39 +0.3
2,473,733 + ECD_02379 0.46 +0.1
2,473,786 + ECD_02379 0.49 +1.4
2,473,787 - ECD_02379 0.49 -0.8
2,473,789 + ECD_02379 0.49 +0.0
2,473,790 - ECD_02379 0.49 +0.4

Or see this region's nucleotide sequence