Experiment: Bas48
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02087 and ECD_02088 are separated by 73 nucleotides ECD_02088 and ECD_02089 are separated by 2 nucleotides ECD_02089 and ECD_02090 are separated by 55 nucleotides
ECD_02087: ECD_02087 - UPF0324 family inner membrane protein, at 2,144,616 to 2,145,665
_02087
ECD_02088: ECD_02088 - endonuclease IV with intrinsic 3'-5' exonuclease activity, at 2,145,739 to 2,146,596
_02088
ECD_02089: ECD_02089 - putative kinase, at 2,146,599 to 2,147,687
_02089
ECD_02090: ECD_02090 - nucleoside permease, at 2,147,743 to 2,148,993
_02090
Position (kb)
2146
2147
2148 Strain fitness (log2 ratio)
-1
0
1
2 at 2145.636 kb on - strand at 2145.671 kb on + strand at 2145.746 kb on - strand at 2145.919 kb on + strand, within ECD_02088 at 2145.952 kb on + strand, within ECD_02088 at 2146.013 kb on + strand, within ECD_02088 at 2146.206 kb on + strand, within ECD_02088 at 2146.275 kb on + strand, within ECD_02088 at 2146.275 kb on + strand, within ECD_02088 at 2146.276 kb on - strand, within ECD_02088 at 2146.353 kb on + strand, within ECD_02088 at 2146.365 kb on + strand, within ECD_02088 at 2146.370 kb on - strand, within ECD_02088 at 2146.709 kb on + strand, within ECD_02089 at 2146.710 kb on - strand, within ECD_02089 at 2146.916 kb on - strand, within ECD_02089 at 2147.150 kb on - strand, within ECD_02089 at 2147.425 kb on - strand, within ECD_02089 at 2147.549 kb on + strand, within ECD_02089 at 2147.632 kb on + strand at 2147.685 kb on + strand at 2147.773 kb on - strand at 2148.156 kb on + strand, within ECD_02090 at 2148.587 kb on - strand, within ECD_02090 at 2148.602 kb on - strand, within ECD_02090
Per-strain Table
Position Strand Gene LocusTag Fraction Bas48 remove 2,145,636 - -0.7 2,145,671 + -0.9 2,145,746 - +0.3 2,145,919 + ECD_02088 0.21 -1.2 2,145,952 + ECD_02088 0.25 -0.1 2,146,013 + ECD_02088 0.32 +0.1 2,146,206 + ECD_02088 0.54 -0.9 2,146,275 + ECD_02088 0.62 -0.7 2,146,275 + ECD_02088 0.62 +0.2 2,146,276 - ECD_02088 0.63 +2.0 2,146,353 + ECD_02088 0.72 +1.0 2,146,365 + ECD_02088 0.73 -0.4 2,146,370 - ECD_02088 0.74 -0.8 2,146,709 + ECD_02089 0.10 +0.2 2,146,710 - ECD_02089 0.10 +0.3 2,146,916 - ECD_02089 0.29 -1.1 2,147,150 - ECD_02089 0.51 -0.3 2,147,425 - ECD_02089 0.76 +0.2 2,147,549 + ECD_02089 0.87 -0.3 2,147,632 + +1.2 2,147,685 + -0.9 2,147,773 - +0.2 2,148,156 + ECD_02090 0.33 -0.2 2,148,587 - ECD_02090 0.67 -0.2 2,148,602 - ECD_02090 0.69 +0.0
Or see this region's nucleotide sequence