Experiment: Bas48
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01486 and ECD_01487 are separated by 120 nucleotides ECD_01487 and ECD_01488 overlap by 11 nucleotides ECD_01488 and ECD_01489 are separated by 219 nucleotides ECD_01489 and ECD_01490 are separated by 19 nucleotides ECD_01490 and ECD_01491 are separated by 31 nucleotides ECD_01491 and ECD_01492 are separated by 30 nucleotides
ECD_01486: ECD_01486 - UPF0056 family inner membrane protein, at 1,566,816 to 1,567,481
_01486
ECD_01487: ECD_01487 - phage N15 gp48-like protein, at 1,567,602 to 1,567,886
_01487
ECD_01488: ECD_01488 - putative phage protein, at 1,567,876 to 1,568,196
_01488
ECD_01489: ECD_01489 - transcriptional repressor of multiple antibiotic resistance, at 1,568,416 to 1,568,850
_01489
ECD_01490: ECD_01490 - multiple antibiotic resistance transcriptional regulator, at 1,568,870 to 1,569,253
_01490
ECD_01491: ECD_01491 - periplasmic mar operon regulator, at 1,569,285 to 1,569,503
_01491
ECD_01492: ECD_01492 - cysteine and O-acetyl-L-serine efflux system, at 1,569,534 to 1,570,433
_01492
Position (kb)
1568
1569 Strain fitness (log2 ratio)
-1
0
1
2 at 1567.429 kb on - strand at 1567.510 kb on + strand at 1567.620 kb on - strand at 1567.620 kb on - strand at 1567.620 kb on - strand at 1567.620 kb on - strand at 1567.646 kb on - strand, within ECD_01487 at 1567.654 kb on - strand, within ECD_01487 at 1567.654 kb on - strand, within ECD_01487 at 1567.654 kb on - strand, within ECD_01487 at 1567.662 kb on - strand, within ECD_01487 at 1567.678 kb on - strand, within ECD_01487 at 1567.678 kb on - strand, within ECD_01487 at 1567.957 kb on - strand, within ECD_01488 at 1567.967 kb on - strand, within ECD_01488 at 1568.197 kb on - strand at 1568.291 kb on - strand at 1568.412 kb on + strand at 1568.412 kb on + strand at 1568.509 kb on + strand, within ECD_01489 at 1568.577 kb on + strand, within ECD_01489 at 1568.634 kb on + strand, within ECD_01489 at 1568.715 kb on + strand, within ECD_01489 at 1568.715 kb on + strand, within ECD_01489 at 1568.735 kb on + strand, within ECD_01489 at 1569.038 kb on + strand, within ECD_01490 at 1569.483 kb on + strand at 1569.484 kb on - strand at 1569.484 kb on - strand at 1569.486 kb on - strand at 1569.536 kb on - strand at 1569.587 kb on - strand at 1569.652 kb on - strand, within ECD_01492 at 1569.719 kb on - strand, within ECD_01492 at 1569.804 kb on - strand, within ECD_01492
Per-strain Table
Position Strand Gene LocusTag Fraction Bas48 remove 1,567,429 - -0.2 1,567,510 + +0.7 1,567,620 - -0.1 1,567,620 - -0.2 1,567,620 - +0.2 1,567,620 - -0.5 1,567,646 - ECD_01487 0.15 -1.0 1,567,654 - ECD_01487 0.18 +0.2 1,567,654 - ECD_01487 0.18 -0.4 1,567,654 - ECD_01487 0.18 +0.1 1,567,662 - ECD_01487 0.21 +0.2 1,567,678 - ECD_01487 0.27 +0.2 1,567,678 - ECD_01487 0.27 +1.7 1,567,957 - ECD_01488 0.25 -1.3 1,567,967 - ECD_01488 0.28 +0.2 1,568,197 - +1.7 1,568,291 - -0.0 1,568,412 + -0.2 1,568,412 + +0.4 1,568,509 + ECD_01489 0.21 +1.4 1,568,577 + ECD_01489 0.37 +0.4 1,568,634 + ECD_01489 0.50 +0.3 1,568,715 + ECD_01489 0.69 +2.4 1,568,715 + ECD_01489 0.69 +0.6 1,568,735 + ECD_01489 0.73 +0.8 1,569,038 + ECD_01490 0.44 -1.4 1,569,483 + -0.7 1,569,484 - -0.2 1,569,484 - -0.6 1,569,486 - +0.1 1,569,536 - +0.9 1,569,587 - +1.3 1,569,652 - ECD_01492 0.13 -0.5 1,569,719 - ECD_01492 0.21 +0.2 1,569,804 - ECD_01492 0.30 -0.9
Or see this region's nucleotide sequence