Strain Fitness in Escherichia coli BL21 around ECD_00959

Experiment: Bas48

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00957 and ECD_00958 are separated by 69 nucleotidesECD_00958 and ECD_00959 are separated by 68 nucleotidesECD_00959 and ECD_00960 are separated by 185 nucleotidesECD_00960 and ECD_00961 are separated by 75 nucleotides ECD_00957: ECD_00957 - ribosome modulation factor, at 1,020,804 to 1,020,971 _00957 ECD_00958: ECD_00958 - beta-hydroxydecanoyl thioester dehydrase, at 1,021,041 to 1,021,559 _00958 ECD_00959: ECD_00959 - putative peptidase, at 1,021,628 to 1,023,388 _00959 ECD_00960: ECD_00960 - Ter macrodomain organizer matS-binding protein, at 1,023,574 to 1,024,026 _00960 ECD_00961: ECD_00961 - outer membrane protein A (3a, at 1,024,102 to 1,025,142 _00961 Position (kb) 1021 1022 1023 1024Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1020.734 kb on + strandat 1020.752 kb on + strandat 1021.658 kb on + strandat 1021.709 kb on - strandat 1021.829 kb on + strand, within ECD_00959at 1021.860 kb on - strand, within ECD_00959at 1022.077 kb on + strand, within ECD_00959at 1022.078 kb on - strand, within ECD_00959at 1022.151 kb on - strand, within ECD_00959at 1022.270 kb on - strand, within ECD_00959at 1022.333 kb on - strand, within ECD_00959at 1022.398 kb on + strand, within ECD_00959at 1022.398 kb on + strand, within ECD_00959at 1022.500 kb on + strand, within ECD_00959at 1022.610 kb on - strand, within ECD_00959at 1022.618 kb on - strand, within ECD_00959at 1022.618 kb on - strand, within ECD_00959at 1022.630 kb on - strand, within ECD_00959at 1022.687 kb on - strand, within ECD_00959at 1022.704 kb on - strand, within ECD_00959at 1022.912 kb on - strand, within ECD_00959at 1022.972 kb on - strand, within ECD_00959at 1023.668 kb on + strand, within ECD_00960at 1023.668 kb on + strand, within ECD_00960at 1023.837 kb on + strand, within ECD_00960at 1024.246 kb on - strand, within ECD_00961at 1024.365 kb on - strand, within ECD_00961

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas48
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1,020,734 + -0.3
1,020,752 + +0.0
1,021,658 + +2.0
1,021,709 - -0.0
1,021,829 + ECD_00959 0.11 +1.3
1,021,860 - ECD_00959 0.13 +1.0
1,022,077 + ECD_00959 0.25 -0.2
1,022,078 - ECD_00959 0.26 +0.5
1,022,151 - ECD_00959 0.30 -0.1
1,022,270 - ECD_00959 0.36 +2.3
1,022,333 - ECD_00959 0.40 +1.4
1,022,398 + ECD_00959 0.44 -0.2
1,022,398 + ECD_00959 0.44 +1.0
1,022,500 + ECD_00959 0.50 +1.2
1,022,610 - ECD_00959 0.56 +2.2
1,022,618 - ECD_00959 0.56 +1.6
1,022,618 - ECD_00959 0.56 +1.0
1,022,630 - ECD_00959 0.57 +3.6
1,022,687 - ECD_00959 0.60 +0.2
1,022,704 - ECD_00959 0.61 -0.1
1,022,912 - ECD_00959 0.73 -1.8
1,022,972 - ECD_00959 0.76 -0.1
1,023,668 + ECD_00960 0.21 +0.2
1,023,668 + ECD_00960 0.21 -0.0
1,023,837 + ECD_00960 0.58 +0.4
1,024,246 - ECD_00961 0.14 +0.4
1,024,365 - ECD_00961 0.25 +0.3

Or see this region's nucleotide sequence