Strain Fitness in Escherichia coli BL21 around ECD_00810

Experiment: Bas48

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00809 and ECD_00810 are separated by 40 nucleotidesECD_00810 and ECD_00811 are separated by 85 nucleotidesECD_00811 and ECD_00812 overlap by 1 nucleotides ECD_00809: ECD_00809 - multidrug efflux system protein, at 867,592 to 868,824 _00809 ECD_00810: ECD_00810 - uncharacterized protein, at 868,865 to 869,149 _00810 ECD_00811: ECD_00811 - 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase; pyrimidine phosphatase; riboflavin synthesis, at 869,235 to 870,050 _00811 ECD_00812: ECD_00812 - putative drug efflux MFS transporter, inner membrane protein, at 870,050 to 871,258 _00812 Position (kb) 868 869 870Strain fitness (log2 ratio) -1 0 1 2 3at 867.941 kb on + strand, within ECD_00809at 868.055 kb on + strand, within ECD_00809at 868.186 kb on - strand, within ECD_00809at 868.187 kb on + strand, within ECD_00809at 868.226 kb on - strand, within ECD_00809at 868.227 kb on + strand, within ECD_00809at 868.227 kb on + strand, within ECD_00809at 868.227 kb on + strand, within ECD_00809at 868.227 kb on + strand, within ECD_00809at 868.228 kb on - strand, within ECD_00809at 868.354 kb on + strand, within ECD_00809at 868.355 kb on - strand, within ECD_00809at 868.458 kb on + strand, within ECD_00809at 868.532 kb on + strand, within ECD_00809at 868.533 kb on - strand, within ECD_00809at 868.550 kb on + strand, within ECD_00809at 868.554 kb on + strand, within ECD_00809at 868.866 kb on + strandat 868.913 kb on + strand, within ECD_00810at 868.913 kb on + strand, within ECD_00810at 868.936 kb on - strand, within ECD_00810at 868.936 kb on - strand, within ECD_00810at 868.977 kb on + strand, within ECD_00810at 868.978 kb on - strand, within ECD_00810at 869.478 kb on - strand, within ECD_00811at 869.534 kb on + strand, within ECD_00811at 869.535 kb on - strand, within ECD_00811at 869.610 kb on - strand, within ECD_00811at 869.619 kb on - strand, within ECD_00811at 870.113 kb on - strandat 870.138 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas48
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867,941 + ECD_00809 0.28 +0.8
868,055 + ECD_00809 0.38 +0.1
868,186 - ECD_00809 0.48 +0.1
868,187 + ECD_00809 0.48 -0.3
868,226 - ECD_00809 0.51 +1.7
868,227 + ECD_00809 0.52 +0.3
868,227 + ECD_00809 0.52 +0.5
868,227 + ECD_00809 0.52 +0.4
868,227 + ECD_00809 0.52 +0.0
868,228 - ECD_00809 0.52 -0.7
868,354 + ECD_00809 0.62 -0.7
868,355 - ECD_00809 0.62 -0.4
868,458 + ECD_00809 0.70 +0.8
868,532 + ECD_00809 0.76 -0.1
868,533 - ECD_00809 0.76 +1.1
868,550 + ECD_00809 0.78 +0.5
868,554 + ECD_00809 0.78 -1.2
868,866 + +0.7
868,913 + ECD_00810 0.17 +0.2
868,913 + ECD_00810 0.17 +0.6
868,936 - ECD_00810 0.25 +0.7
868,936 - ECD_00810 0.25 -0.2
868,977 + ECD_00810 0.39 -0.6
868,978 - ECD_00810 0.40 +3.1
869,478 - ECD_00811 0.30 -1.1
869,534 + ECD_00811 0.37 +0.7
869,535 - ECD_00811 0.37 -0.9
869,610 - ECD_00811 0.46 -0.4
869,619 - ECD_00811 0.47 +0.5
870,113 - +0.2
870,138 - +0.3

Or see this region's nucleotide sequence