Experiment: Bas48
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00371 and ECD_00372 are separated by 53 nucleotides ECD_00372 and ECD_00373 overlap by 38 nucleotides
ECD_00371: ECD_00371 - tRNA s(4)U8 sulfurtransferase, at 406,950 to 408,398
_00371
ECD_00372: ECD_00372 - oxidative-stress-resistance chaperone, at 408,452 to 409,042
_00372
ECD_00373: ECD_00373 - 2-dehydropantoate reductase, NADPH-specific, at 409,005 to 409,916
_00373
Position (kb) 408
409
410 Strain fitness (log2 ratio) -2
-1
0
1
2 at 407.532 kb on + strand, within ECD_00371 at 407.532 kb on + strand, within ECD_00371 at 407.532 kb on + strand, within ECD_00371 at 407.534 kb on + strand, within ECD_00371 at 407.535 kb on - strand, within ECD_00371 at 407.535 kb on - strand, within ECD_00371 at 407.566 kb on - strand, within ECD_00371 at 407.747 kb on + strand, within ECD_00371 at 407.747 kb on + strand, within ECD_00371 at 407.747 kb on + strand, within ECD_00371 at 407.747 kb on + strand, within ECD_00371 at 407.748 kb on - strand, within ECD_00371 at 407.976 kb on + strand, within ECD_00371 at 408.212 kb on + strand, within ECD_00371 at 408.213 kb on - strand, within ECD_00371 at 408.213 kb on - strand, within ECD_00371 at 408.351 kb on + strand at 408.351 kb on + strand at 408.371 kb on + strand at 408.454 kb on - strand at 408.459 kb on + strand at 408.462 kb on + strand at 408.466 kb on + strand at 408.466 kb on + strand at 408.467 kb on - strand at 408.830 kb on + strand, within ECD_00372 at 408.844 kb on - strand, within ECD_00372 at 409.141 kb on + strand, within ECD_00373 at 409.297 kb on - strand, within ECD_00373 at 409.297 kb on - strand, within ECD_00373 at 409.326 kb on + strand, within ECD_00373 at 409.472 kb on - strand, within ECD_00373 at 409.529 kb on + strand, within ECD_00373 at 409.530 kb on - strand, within ECD_00373 at 409.632 kb on + strand, within ECD_00373 at 409.639 kb on - strand, within ECD_00373 at 409.647 kb on - strand, within ECD_00373 at 409.651 kb on - strand, within ECD_00373 at 409.806 kb on - strand, within ECD_00373 at 409.875 kb on + strand at 409.876 kb on - strand at 409.876 kb on - strand at 409.954 kb on - strand at 409.966 kb on + strand at 409.998 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas48 remove 407,532 + ECD_00371 0.40 +0.7 407,532 + ECD_00371 0.40 -0.1 407,532 + ECD_00371 0.40 +1.0 407,534 + ECD_00371 0.40 -0.0 407,535 - ECD_00371 0.40 +2.0 407,535 - ECD_00371 0.40 +1.1 407,566 - ECD_00371 0.43 -0.3 407,747 + ECD_00371 0.55 +0.7 407,747 + ECD_00371 0.55 +0.6 407,747 + ECD_00371 0.55 +0.7 407,747 + ECD_00371 0.55 +1.3 407,748 - ECD_00371 0.55 +0.6 407,976 + ECD_00371 0.71 +0.3 408,212 + ECD_00371 0.87 -0.3 408,213 - ECD_00371 0.87 +0.1 408,213 - ECD_00371 0.87 +0.7 408,351 + -0.0 408,351 + +0.6 408,371 + +0.5 408,454 - +0.1 408,459 + -0.9 408,462 + -0.4 408,466 + +0.7 408,466 + -1.2 408,467 - +0.7 408,830 + ECD_00372 0.64 +0.5 408,844 - ECD_00372 0.66 +1.6 409,141 + ECD_00373 0.15 +0.1 409,297 - ECD_00373 0.32 +0.6 409,297 - ECD_00373 0.32 +0.4 409,326 + ECD_00373 0.35 +0.2 409,472 - ECD_00373 0.51 -0.0 409,529 + ECD_00373 0.57 -0.2 409,530 - ECD_00373 0.58 +0.9 409,632 + ECD_00373 0.69 -0.1 409,639 - ECD_00373 0.70 -1.9 409,647 - ECD_00373 0.70 +2.0 409,651 - ECD_00373 0.71 +0.8 409,806 - ECD_00373 0.88 +0.9 409,875 + -0.3 409,876 - +0.1 409,876 - +0.0 409,954 - -0.5 409,966 + -0.0 409,998 + +0.8
Or see this region's nucleotide sequence