Experiment: Bas48
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00276 and ECD_00277 overlap by 1 nucleotides ECD_00277 and ECD_00278 are separated by 421 nucleotides
ECD_00276: ECD_00276 - putative NAD(P)-binding succinyl-CoA synthase, at 306,406 to 307,953
_00276
ECD_00277: ECD_00277 - DUF1116 family protein, at 307,953 to 309,371
_00277
ECD_00278: ECD_00278 - carbamate kinase-like protein, at 309,793 to 310,743
_00278
Position (kb) 307
308
309
310 Strain fitness (log2 ratio) -2
-1
0
1
2 at 306.984 kb on + strand, within ECD_00276 at 307.167 kb on + strand, within ECD_00276 at 307.168 kb on - strand, within ECD_00276 at 307.429 kb on + strand, within ECD_00276 at 307.429 kb on + strand, within ECD_00276 at 307.430 kb on - strand, within ECD_00276 at 307.433 kb on + strand, within ECD_00276 at 307.433 kb on + strand, within ECD_00276 at 307.549 kb on - strand, within ECD_00276 at 307.811 kb on - strand at 307.844 kb on + strand at 307.844 kb on + strand at 307.988 kb on + strand at 307.988 kb on + strand at 307.989 kb on - strand at 308.039 kb on - strand at 308.039 kb on - strand at 308.451 kb on - strand, within ECD_00277 at 308.490 kb on + strand, within ECD_00277 at 308.492 kb on + strand, within ECD_00277 at 308.492 kb on + strand, within ECD_00277 at 308.492 kb on + strand, within ECD_00277 at 308.492 kb on + strand, within ECD_00277 at 308.493 kb on - strand, within ECD_00277 at 308.638 kb on + strand, within ECD_00277 at 308.796 kb on + strand, within ECD_00277 at 308.797 kb on - strand, within ECD_00277 at 308.862 kb on + strand, within ECD_00277 at 308.985 kb on + strand, within ECD_00277 at 308.987 kb on + strand, within ECD_00277 at 308.987 kb on + strand, within ECD_00277 at 308.987 kb on + strand, within ECD_00277 at 308.987 kb on + strand, within ECD_00277 at 308.988 kb on - strand, within ECD_00277 at 309.374 kb on + strand at 309.374 kb on + strand at 309.374 kb on + strand at 309.374 kb on + strand at 309.374 kb on + strand at 309.374 kb on + strand at 309.447 kb on - strand at 309.695 kb on + strand at 309.786 kb on + strand at 309.844 kb on - strand at 310.044 kb on + strand, within ECD_00278 at 310.087 kb on - strand, within ECD_00278 at 310.309 kb on - strand, within ECD_00278 at 310.358 kb on + strand, within ECD_00278
Per-strain Table
Position Strand Gene LocusTag Fraction Bas48 remove 306,984 + ECD_00276 0.37 -0.6 307,167 + ECD_00276 0.49 +1.0 307,168 - ECD_00276 0.49 -2.4 307,429 + ECD_00276 0.66 +0.2 307,429 + ECD_00276 0.66 +0.2 307,430 - ECD_00276 0.66 +0.4 307,433 + ECD_00276 0.66 +0.6 307,433 + ECD_00276 0.66 -0.1 307,549 - ECD_00276 0.74 -0.6 307,811 - -0.3 307,844 + +0.1 307,844 + +0.6 307,988 + +0.2 307,988 + -0.1 307,989 - +0.1 308,039 - -0.5 308,039 - +0.6 308,451 - ECD_00277 0.35 +0.2 308,490 + ECD_00277 0.38 +0.4 308,492 + ECD_00277 0.38 +0.2 308,492 + ECD_00277 0.38 +0.2 308,492 + ECD_00277 0.38 -0.3 308,492 + ECD_00277 0.38 -0.3 308,493 - ECD_00277 0.38 +0.6 308,638 + ECD_00277 0.48 -0.2 308,796 + ECD_00277 0.59 -0.0 308,797 - ECD_00277 0.59 +1.5 308,862 + ECD_00277 0.64 +1.6 308,985 + ECD_00277 0.73 -0.3 308,987 + ECD_00277 0.73 +0.9 308,987 + ECD_00277 0.73 +0.5 308,987 + ECD_00277 0.73 +0.7 308,987 + ECD_00277 0.73 +0.1 308,988 - ECD_00277 0.73 -0.5 309,374 + -0.3 309,374 + -0.8 309,374 + -1.0 309,374 + +1.8 309,374 + -0.3 309,374 + -0.1 309,447 - +0.2 309,695 + +1.2 309,786 + -0.4 309,844 - -0.8 310,044 + ECD_00278 0.26 +0.8 310,087 - ECD_00278 0.31 +0.5 310,309 - ECD_00278 0.54 +1.8 310,358 + ECD_00278 0.59 -0.0
Or see this region's nucleotide sequence