Experiment: MJM9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS26020 and LU632_RS26025 are separated by 9 nucleotides LU632_RS26025 and LU632_RS26030 are separated by 47 nucleotides LU632_RS26030 and LU632_RS26035 are separated by 17 nucleotides LU632_RS26035 and LU632_RS26040 are separated by 12 nucleotides
LU632_RS26015: LU632_RS26015 - hypothetical protein, at 12,776 to 13,306
_RS26015
LU632_RS26020: LU632_RS26020 - DUF4054 domain-containing protein, at 13,303 to 13,686
_RS26020
LU632_RS26025: LU632_RS26025 - hypothetical protein, at 13,696 to 14,256
_RS26025
LU632_RS26030: LU632_RS26030 - DUF2184 domain-containing protein, at 14,304 to 15,260
_RS26030
LU632_RS26035: LU632_RS26035 - hypothetical protein, at 15,278 to 15,760
_RS26035
LU632_RS26040: LU632_RS26040 - DUF2213 domain-containing protein, at 15,773 to 17,047
_RS26040
Position (kb) 14
15
16 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 13.511 kb on + strand, within LU632_RS26020 at 14.296 kb on - strand at 14.309 kb on + strand at 14.309 kb on + strand at 14.310 kb on - strand at 14.320 kb on + strand at 14.320 kb on + strand at 14.320 kb on + strand at 14.320 kb on + strand at 14.321 kb on - strand at 14.371 kb on + strand at 14.371 kb on + strand at 14.371 kb on + strand at 14.372 kb on - strand at 14.372 kb on - strand at 14.379 kb on + strand at 14.380 kb on - strand at 14.412 kb on - strand, within LU632_RS26030 at 14.456 kb on + strand, within LU632_RS26030 at 14.459 kb on + strand, within LU632_RS26030 at 14.460 kb on - strand, within LU632_RS26030 at 14.460 kb on - strand, within LU632_RS26030 at 14.461 kb on + strand, within LU632_RS26030 at 14.502 kb on - strand, within LU632_RS26030 at 14.510 kb on + strand, within LU632_RS26030 at 14.510 kb on + strand, within LU632_RS26030 at 14.561 kb on + strand, within LU632_RS26030 at 14.672 kb on - strand, within LU632_RS26030 at 14.820 kb on - strand, within LU632_RS26030 at 14.842 kb on + strand, within LU632_RS26030 at 14.842 kb on + strand, within LU632_RS26030 at 14.843 kb on - strand, within LU632_RS26030 at 14.843 kb on - strand, within LU632_RS26030 at 14.843 kb on - strand, within LU632_RS26030 at 14.843 kb on - strand, within LU632_RS26030 at 14.869 kb on + strand, within LU632_RS26030 at 14.870 kb on - strand, within LU632_RS26030 at 14.890 kb on + strand, within LU632_RS26030 at 14.890 kb on + strand, within LU632_RS26030 at 14.890 kb on + strand, within LU632_RS26030 at 14.891 kb on - strand, within LU632_RS26030 at 14.905 kb on - strand, within LU632_RS26030 at 14.944 kb on - strand, within LU632_RS26030 at 15.000 kb on - strand, within LU632_RS26030 at 15.035 kb on + strand, within LU632_RS26030 at 15.036 kb on - strand, within LU632_RS26030 at 15.096 kb on - strand, within LU632_RS26030 at 15.105 kb on + strand, within LU632_RS26030 at 15.106 kb on - strand, within LU632_RS26030 at 15.106 kb on - strand, within LU632_RS26030 at 15.119 kb on + strand, within LU632_RS26030 at 15.180 kb on + strand at 15.180 kb on + strand at 15.180 kb on + strand at 15.180 kb on + strand at 15.180 kb on + strand at 15.181 kb on - strand at 15.181 kb on - strand at 15.181 kb on - strand at 15.202 kb on - strand at 15.279 kb on + strand at 15.279 kb on + strand at 15.280 kb on - strand at 15.280 kb on - strand at 15.288 kb on + strand at 15.328 kb on + strand, within LU632_RS26035 at 15.328 kb on + strand, within LU632_RS26035 at 15.329 kb on - strand, within LU632_RS26035 at 15.398 kb on - strand, within LU632_RS26035 at 15.416 kb on + strand, within LU632_RS26035 at 15.426 kb on + strand, within LU632_RS26035 at 15.426 kb on + strand, within LU632_RS26035 at 15.427 kb on - strand, within LU632_RS26035 at 15.427 kb on - strand, within LU632_RS26035 at 15.427 kb on - strand, within LU632_RS26035 at 15.475 kb on + strand, within LU632_RS26035 at 15.476 kb on - strand, within LU632_RS26035 at 15.491 kb on + strand, within LU632_RS26035 at 15.491 kb on + strand, within LU632_RS26035 at 15.491 kb on + strand, within LU632_RS26035 at 15.491 kb on + strand, within LU632_RS26035 at 15.491 kb on + strand, within LU632_RS26035 at 15.491 kb on + strand, within LU632_RS26035 at 15.492 kb on - strand, within LU632_RS26035 at 15.492 kb on - strand, within LU632_RS26035 at 15.492 kb on - strand, within LU632_RS26035 at 15.492 kb on - strand, within LU632_RS26035 at 15.492 kb on - strand, within LU632_RS26035 at 15.492 kb on - strand, within LU632_RS26035 at 15.573 kb on + strand, within LU632_RS26035 at 15.573 kb on + strand, within LU632_RS26035 at 15.574 kb on - strand, within LU632_RS26035 at 15.574 kb on - strand, within LU632_RS26035 at 15.574 kb on - strand, within LU632_RS26035 at 15.574 kb on - strand, within LU632_RS26035 at 15.574 kb on - strand, within LU632_RS26035 at 15.645 kb on + strand, within LU632_RS26035 at 15.661 kb on + strand, within LU632_RS26035 at 15.661 kb on + strand, within LU632_RS26035 at 15.661 kb on + strand, within LU632_RS26035 at 15.712 kb on + strand at 15.712 kb on + strand at 15.712 kb on + strand at 15.712 kb on + strand at 15.713 kb on - strand at 15.713 kb on - strand at 15.761 kb on + strand at 15.761 kb on + strand at 15.761 kb on + strand at 15.761 kb on + strand at 15.761 kb on + strand at 15.761 kb on + strand at 15.761 kb on + strand at 15.762 kb on - strand at 15.762 kb on - strand at 15.817 kb on + strand at 15.899 kb on + strand at 15.900 kb on - strand at 16.017 kb on + strand, within LU632_RS26040 at 16.072 kb on + strand, within LU632_RS26040 at 16.072 kb on + strand, within LU632_RS26040 at 16.109 kb on + strand, within LU632_RS26040 at 16.110 kb on - strand, within LU632_RS26040 at 16.110 kb on - strand, within LU632_RS26040 at 16.110 kb on - strand, within LU632_RS26040 at 16.110 kb on - strand, within LU632_RS26040 at 16.153 kb on - strand, within LU632_RS26040 at 16.230 kb on - strand, within LU632_RS26040 at 16.249 kb on + strand, within LU632_RS26040
Per-strain Table
Position Strand Gene LocusTag Fraction MJM9 remove 13,511 + LU632_RS26020 0.54 +1.1 14,296 - +0.3 14,309 + +0.0 14,309 + -0.3 14,310 - -0.4 14,320 + -0.1 14,320 + +0.2 14,320 + +0.9 14,320 + -0.1 14,321 - +0.5 14,371 + -0.2 14,371 + -0.3 14,371 + -0.2 14,372 - -0.1 14,372 - +0.5 14,379 + -0.9 14,380 - -0.2 14,412 - LU632_RS26030 0.11 -0.7 14,456 + LU632_RS26030 0.16 -0.1 14,459 + LU632_RS26030 0.16 -0.3 14,460 - LU632_RS26030 0.16 -1.5 14,460 - LU632_RS26030 0.16 -0.5 14,461 + LU632_RS26030 0.16 +0.3 14,502 - LU632_RS26030 0.21 -1.1 14,510 + LU632_RS26030 0.22 -0.5 14,510 + LU632_RS26030 0.22 +0.2 14,561 + LU632_RS26030 0.27 -1.2 14,672 - LU632_RS26030 0.38 -0.9 14,820 - LU632_RS26030 0.54 -0.6 14,842 + LU632_RS26030 0.56 -1.4 14,842 + LU632_RS26030 0.56 -0.1 14,843 - LU632_RS26030 0.56 -0.3 14,843 - LU632_RS26030 0.56 +0.8 14,843 - LU632_RS26030 0.56 +0.2 14,843 - LU632_RS26030 0.56 +0.5 14,869 + LU632_RS26030 0.59 -0.3 14,870 - LU632_RS26030 0.59 -0.6 14,890 + LU632_RS26030 0.61 -2.1 14,890 + LU632_RS26030 0.61 -0.4 14,890 + LU632_RS26030 0.61 -1.4 14,891 - LU632_RS26030 0.61 +0.3 14,905 - LU632_RS26030 0.63 +0.1 14,944 - LU632_RS26030 0.67 -1.2 15,000 - LU632_RS26030 0.73 -0.7 15,035 + LU632_RS26030 0.76 -0.5 15,036 - LU632_RS26030 0.76 +0.2 15,096 - LU632_RS26030 0.83 -0.1 15,105 + LU632_RS26030 0.84 +0.9 15,106 - LU632_RS26030 0.84 -0.5 15,106 - LU632_RS26030 0.84 -0.7 15,119 + LU632_RS26030 0.85 -0.5 15,180 + -0.2 15,180 + -0.0 15,180 + -0.5 15,180 + +0.0 15,180 + -1.8 15,181 - +0.5 15,181 - +0.1 15,181 - +0.2 15,202 - +0.1 15,279 + -0.1 15,279 + +0.9 15,280 - +0.4 15,280 - -0.4 15,288 + -2.0 15,328 + LU632_RS26035 0.10 -0.6 15,328 + LU632_RS26035 0.10 -0.4 15,329 - LU632_RS26035 0.11 -0.1 15,398 - LU632_RS26035 0.25 -0.3 15,416 + LU632_RS26035 0.29 -0.5 15,426 + LU632_RS26035 0.31 +0.9 15,426 + LU632_RS26035 0.31 -0.5 15,427 - LU632_RS26035 0.31 -0.4 15,427 - LU632_RS26035 0.31 -0.9 15,427 - LU632_RS26035 0.31 -0.6 15,475 + LU632_RS26035 0.41 -0.4 15,476 - LU632_RS26035 0.41 -3.3 15,491 + LU632_RS26035 0.44 -1.1 15,491 + LU632_RS26035 0.44 +0.6 15,491 + LU632_RS26035 0.44 -1.2 15,491 + LU632_RS26035 0.44 +0.2 15,491 + LU632_RS26035 0.44 +0.5 15,491 + LU632_RS26035 0.44 -0.4 15,492 - LU632_RS26035 0.44 -1.5 15,492 - LU632_RS26035 0.44 -0.1 15,492 - LU632_RS26035 0.44 +0.1 15,492 - LU632_RS26035 0.44 -0.6 15,492 - LU632_RS26035 0.44 -1.8 15,492 - LU632_RS26035 0.44 -0.8 15,573 + LU632_RS26035 0.61 +0.0 15,573 + LU632_RS26035 0.61 -0.1 15,574 - LU632_RS26035 0.61 -2.1 15,574 - LU632_RS26035 0.61 +1.7 15,574 - LU632_RS26035 0.61 -0.3 15,574 - LU632_RS26035 0.61 -1.3 15,574 - LU632_RS26035 0.61 -0.6 15,645 + LU632_RS26035 0.76 -0.8 15,661 + LU632_RS26035 0.79 +0.1 15,661 + LU632_RS26035 0.79 -0.9 15,661 + LU632_RS26035 0.79 -1.1 15,712 + -0.2 15,712 + +0.7 15,712 + +0.1 15,712 + -0.7 15,713 - +0.1 15,713 - +0.9 15,761 + -0.4 15,761 + +0.2 15,761 + -0.3 15,761 + +0.0 15,761 + +0.8 15,761 + -0.3 15,761 + -0.4 15,762 - +0.4 15,762 - -1.1 15,817 + -0.2 15,899 + -1.0 15,900 - -0.7 16,017 + LU632_RS26040 0.19 -0.1 16,072 + LU632_RS26040 0.23 -0.2 16,072 + LU632_RS26040 0.23 +0.3 16,109 + LU632_RS26040 0.26 +2.5 16,110 - LU632_RS26040 0.26 -1.7 16,110 - LU632_RS26040 0.26 -0.9 16,110 - LU632_RS26040 0.26 -0.7 16,110 - LU632_RS26040 0.26 +1.2 16,153 - LU632_RS26040 0.30 +0.1 16,230 - LU632_RS26040 0.36 -1.3 16,249 + LU632_RS26040 0.37 +0.1
Or see this region's nucleotide sequence