Experiment: MJM9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS23190 and LU632_RS23195 are separated by 155 nucleotides LU632_RS23195 and LU632_RS23200 are separated by 95 nucleotides LU632_RS23200 and LU632_RS23205 overlap by 8 nucleotides LU632_RS23205 and LU632_RS23210 are separated by 132 nucleotides LU632_RS23210 and LU632_RS23215 are separated by 199 nucleotides
LU632_RS23190: LU632_RS23190 - IS6 family transposase, at 4,419,471 to 4,420,118
_RS23190
LU632_RS23195: LU632_RS23195 - amidohydrolase, at 4,420,274 to 4,420,471
_RS23195
LU632_RS23200: LU632_RS23200 - hypothetical protein, at 4,420,567 to 4,421,055
_RS23200
LU632_RS23205: LU632_RS23205 - alpha/beta hydrolase, at 4,421,048 to 4,421,200
_RS23205
LU632_RS23210: LU632_RS23210 - YbjP/YqhG family protein, at 4,421,333 to 4,421,779
_RS23210
LU632_RS23215: LU632_RS23215 - VirK/YbjX family protein, at 4,421,979 to 4,422,071
_RS23215
LU632_RS23220: LU632_RS23220 - VirK/YbjX family protein, at 4,422,050 to 4,422,331
_RS23220
Position (kb) 4420
4421
4422 Strain fitness (log2 ratio) -1
0
1
2 at 4419.672 kb on + strand, within LU632_RS23190 at 4419.673 kb on - strand, within LU632_RS23190 at 4419.673 kb on - strand, within LU632_RS23190 at 4419.698 kb on - strand, within LU632_RS23190 at 4419.848 kb on + strand, within LU632_RS23190 at 4419.919 kb on - strand, within LU632_RS23190 at 4419.923 kb on + strand, within LU632_RS23190 at 4420.057 kb on - strand at 4420.128 kb on - strand at 4420.258 kb on - strand at 4420.273 kb on + strand at 4420.416 kb on + strand, within LU632_RS23195 at 4420.488 kb on - strand at 4420.531 kb on + strand at 4420.629 kb on + strand, within LU632_RS23200 at 4420.630 kb on - strand, within LU632_RS23200 at 4420.660 kb on + strand, within LU632_RS23200 at 4420.820 kb on + strand, within LU632_RS23200 at 4420.951 kb on + strand, within LU632_RS23200 at 4420.951 kb on + strand, within LU632_RS23200 at 4421.027 kb on - strand at 4421.073 kb on + strand, within LU632_RS23205 at 4421.073 kb on + strand, within LU632_RS23205 at 4421.074 kb on - strand, within LU632_RS23205 at 4421.079 kb on - strand, within LU632_RS23205 at 4421.079 kb on - strand, within LU632_RS23205 at 4421.079 kb on - strand, within LU632_RS23205 at 4421.128 kb on + strand, within LU632_RS23205 at 4421.128 kb on + strand, within LU632_RS23205 at 4421.272 kb on + strand at 4421.272 kb on + strand at 4421.272 kb on + strand at 4421.279 kb on + strand at 4421.329 kb on - strand at 4421.331 kb on + strand at 4421.361 kb on + strand at 4421.401 kb on + strand, within LU632_RS23210 at 4421.433 kb on - strand, within LU632_RS23210 at 4421.441 kb on + strand, within LU632_RS23210 at 4421.504 kb on + strand, within LU632_RS23210 at 4421.534 kb on + strand, within LU632_RS23210 at 4421.535 kb on - strand, within LU632_RS23210 at 4421.663 kb on + strand, within LU632_RS23210 at 4421.674 kb on - strand, within LU632_RS23210 at 4421.700 kb on + strand, within LU632_RS23210 at 4421.700 kb on + strand, within LU632_RS23210 at 4421.701 kb on - strand, within LU632_RS23210 at 4421.733 kb on + strand, within LU632_RS23210 at 4421.742 kb on + strand at 4421.806 kb on + strand at 4421.807 kb on - strand at 4421.807 kb on - strand at 4421.809 kb on - strand at 4421.874 kb on + strand at 4421.900 kb on + strand at 4421.900 kb on + strand at 4421.900 kb on + strand at 4421.901 kb on - strand at 4421.951 kb on + strand at 4421.951 kb on + strand at 4421.951 kb on + strand at 4422.034 kb on - strand, within LU632_RS23215
Per-strain Table
Position Strand Gene LocusTag Fraction MJM9 remove 4,419,672 + LU632_RS23190 0.31 -0.1 4,419,673 - LU632_RS23190 0.31 +1.9 4,419,673 - LU632_RS23190 0.31 -0.2 4,419,698 - LU632_RS23190 0.35 +0.0 4,419,848 + LU632_RS23190 0.58 -0.2 4,419,919 - LU632_RS23190 0.69 -0.2 4,419,923 + LU632_RS23190 0.70 +1.9 4,420,057 - -0.3 4,420,128 - +0.6 4,420,258 - -0.1 4,420,273 + +0.6 4,420,416 + LU632_RS23195 0.72 +0.2 4,420,488 - -0.9 4,420,531 + -1.3 4,420,629 + LU632_RS23200 0.13 -0.9 4,420,630 - LU632_RS23200 0.13 +0.1 4,420,660 + LU632_RS23200 0.19 +0.9 4,420,820 + LU632_RS23200 0.52 -0.1 4,420,951 + LU632_RS23200 0.79 +0.6 4,420,951 + LU632_RS23200 0.79 +0.9 4,421,027 - +0.1 4,421,073 + LU632_RS23205 0.16 +0.5 4,421,073 + LU632_RS23205 0.16 -0.1 4,421,074 - LU632_RS23205 0.17 +0.4 4,421,079 - LU632_RS23205 0.20 -0.9 4,421,079 - LU632_RS23205 0.20 -0.4 4,421,079 - LU632_RS23205 0.20 +0.1 4,421,128 + LU632_RS23205 0.52 +1.0 4,421,128 + LU632_RS23205 0.52 -0.8 4,421,272 + -0.3 4,421,272 + +0.5 4,421,272 + +1.1 4,421,279 + +0.2 4,421,329 - +0.2 4,421,331 + +0.1 4,421,361 + +0.1 4,421,401 + LU632_RS23210 0.15 +0.2 4,421,433 - LU632_RS23210 0.22 +0.4 4,421,441 + LU632_RS23210 0.24 +0.1 4,421,504 + LU632_RS23210 0.38 -0.3 4,421,534 + LU632_RS23210 0.45 +0.6 4,421,535 - LU632_RS23210 0.45 +0.0 4,421,663 + LU632_RS23210 0.74 -0.1 4,421,674 - LU632_RS23210 0.76 -0.9 4,421,700 + LU632_RS23210 0.82 +1.5 4,421,700 + LU632_RS23210 0.82 -0.9 4,421,701 - LU632_RS23210 0.82 -0.6 4,421,733 + LU632_RS23210 0.89 +0.9 4,421,742 + +0.1 4,421,806 + -0.1 4,421,807 - +0.2 4,421,807 - +0.3 4,421,809 - +1.5 4,421,874 + -0.1 4,421,900 + -1.7 4,421,900 + +0.6 4,421,900 + -0.5 4,421,901 - -0.1 4,421,951 + -0.1 4,421,951 + +0.1 4,421,951 + -0.1 4,422,034 - LU632_RS23215 0.59 -0.1
Or see this region's nucleotide sequence