Experiment: MJM9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS22815 and ppiA are separated by 102 nucleotides ppiA and tsgA are separated by 274 nucleotides tsgA and LU632_RS22830 are separated by 45 nucleotides
LU632_RS22815: LU632_RS22815 - aminodeoxychorismate synthase component II, at 4,344,173 to 4,344,748
_RS22815
LU632_RS22820: ppiA - peptidylprolyl isomerase A, at 4,344,851 to 4,345,423
ppiA
LU632_RS22825: tsgA - MFS transporter TsgA, at 4,345,698 to 4,346,882
tsgA
LU632_RS22830: LU632_RS22830 - cytosine deaminase, at 4,346,928 to 4,348,205
_RS22830
Position (kb) 4345
4346
4347 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4344.726 kb on + strand at 4344.727 kb on - strand at 4344.727 kb on - strand at 4344.776 kb on + strand at 4344.835 kb on - strand at 4344.965 kb on - strand, within ppiA at 4345.084 kb on + strand, within ppiA at 4345.084 kb on + strand, within ppiA at 4345.090 kb on + strand, within ppiA at 4345.148 kb on - strand, within ppiA at 4345.192 kb on + strand, within ppiA at 4345.193 kb on - strand, within ppiA at 4345.222 kb on + strand, within ppiA at 4345.229 kb on - strand, within ppiA at 4345.229 kb on - strand, within ppiA at 4345.230 kb on + strand, within ppiA at 4345.322 kb on - strand, within ppiA at 4345.411 kb on + strand at 4345.441 kb on - strand at 4345.509 kb on + strand at 4345.510 kb on - strand at 4345.525 kb on + strand at 4345.526 kb on - strand at 4345.531 kb on + strand at 4345.557 kb on + strand at 4345.558 kb on - strand at 4345.561 kb on + strand at 4345.561 kb on + strand at 4345.562 kb on - strand at 4345.563 kb on + strand at 4345.564 kb on - strand at 4345.585 kb on + strand at 4345.585 kb on + strand at 4345.585 kb on + strand at 4345.585 kb on + strand at 4345.585 kb on + strand at 4345.588 kb on + strand at 4345.614 kb on + strand at 4345.615 kb on - strand at 4345.615 kb on - strand at 4345.746 kb on + strand at 4345.746 kb on + strand at 4345.796 kb on + strand at 4345.797 kb on - strand at 4345.806 kb on + strand at 4345.807 kb on - strand at 4345.925 kb on - strand, within tsgA at 4345.943 kb on - strand, within tsgA at 4345.943 kb on - strand, within tsgA at 4346.011 kb on + strand, within tsgA at 4346.012 kb on - strand, within tsgA at 4346.020 kb on + strand, within tsgA at 4346.021 kb on - strand, within tsgA at 4346.070 kb on + strand, within tsgA at 4346.194 kb on - strand, within tsgA at 4346.201 kb on + strand, within tsgA at 4346.207 kb on - strand, within tsgA at 4346.346 kb on + strand, within tsgA at 4346.346 kb on + strand, within tsgA at 4346.346 kb on + strand, within tsgA at 4346.347 kb on - strand, within tsgA at 4346.347 kb on - strand, within tsgA at 4346.389 kb on - strand, within tsgA at 4346.397 kb on - strand, within tsgA at 4346.457 kb on + strand, within tsgA at 4346.458 kb on - strand, within tsgA at 4346.458 kb on - strand, within tsgA at 4346.458 kb on - strand, within tsgA at 4346.459 kb on + strand, within tsgA at 4346.459 kb on + strand, within tsgA at 4346.459 kb on + strand, within tsgA at 4346.459 kb on + strand, within tsgA at 4346.460 kb on - strand, within tsgA at 4346.460 kb on - strand, within tsgA at 4346.460 kb on - strand, within tsgA at 4346.460 kb on - strand, within tsgA at 4346.513 kb on + strand, within tsgA at 4346.519 kb on + strand, within tsgA at 4346.553 kb on + strand, within tsgA at 4346.567 kb on + strand, within tsgA at 4346.597 kb on + strand, within tsgA at 4346.627 kb on + strand, within tsgA at 4346.627 kb on + strand, within tsgA at 4346.628 kb on - strand, within tsgA at 4346.631 kb on + strand, within tsgA at 4346.631 kb on + strand, within tsgA at 4346.787 kb on - strand at 4346.816 kb on + strand at 4346.816 kb on + strand at 4346.816 kb on + strand at 4346.817 kb on - strand at 4346.817 kb on - strand at 4346.891 kb on - strand at 4346.965 kb on + strand at 4347.023 kb on - strand at 4347.108 kb on - strand, within LU632_RS22830 at 4347.108 kb on - strand, within LU632_RS22830 at 4347.108 kb on - strand, within LU632_RS22830 at 4347.126 kb on + strand, within LU632_RS22830 at 4347.126 kb on + strand, within LU632_RS22830 at 4347.127 kb on - strand, within LU632_RS22830 at 4347.127 kb on - strand, within LU632_RS22830 at 4347.132 kb on + strand, within LU632_RS22830 at 4347.132 kb on + strand, within LU632_RS22830 at 4347.220 kb on + strand, within LU632_RS22830 at 4347.221 kb on - strand, within LU632_RS22830 at 4347.232 kb on - strand, within LU632_RS22830 at 4347.232 kb on - strand, within LU632_RS22830 at 4347.232 kb on - strand, within LU632_RS22830 at 4347.252 kb on - strand, within LU632_RS22830 at 4347.344 kb on + strand, within LU632_RS22830 at 4347.344 kb on + strand, within LU632_RS22830 at 4347.349 kb on - strand, within LU632_RS22830 at 4347.349 kb on - strand, within LU632_RS22830 at 4347.438 kb on + strand, within LU632_RS22830 at 4347.438 kb on + strand, within LU632_RS22830 at 4347.438 kb on + strand, within LU632_RS22830 at 4347.438 kb on + strand, within LU632_RS22830 at 4347.438 kb on + strand, within LU632_RS22830 at 4347.438 kb on + strand, within LU632_RS22830 at 4347.439 kb on - strand, within LU632_RS22830 at 4347.439 kb on - strand, within LU632_RS22830 at 4347.439 kb on - strand, within LU632_RS22830 at 4347.440 kb on + strand, within LU632_RS22830 at 4347.440 kb on + strand, within LU632_RS22830 at 4347.453 kb on - strand, within LU632_RS22830 at 4347.582 kb on + strand, within LU632_RS22830 at 4347.583 kb on - strand, within LU632_RS22830 at 4347.583 kb on - strand, within LU632_RS22830 at 4347.587 kb on + strand, within LU632_RS22830 at 4347.587 kb on + strand, within LU632_RS22830 at 4347.590 kb on + strand, within LU632_RS22830 at 4347.591 kb on - strand, within LU632_RS22830 at 4347.591 kb on - strand, within LU632_RS22830 at 4347.741 kb on - strand, within LU632_RS22830
Per-strain Table
Position Strand Gene LocusTag Fraction MJM9 remove 4,344,726 + -0.8 4,344,727 - +0.0 4,344,727 - +0.2 4,344,776 + -0.1 4,344,835 - +0.0 4,344,965 - ppiA LU632_RS22820 0.20 +0.2 4,345,084 + ppiA LU632_RS22820 0.41 -0.4 4,345,084 + ppiA LU632_RS22820 0.41 -0.1 4,345,090 + ppiA LU632_RS22820 0.42 -0.1 4,345,148 - ppiA LU632_RS22820 0.52 -0.7 4,345,192 + ppiA LU632_RS22820 0.60 +0.2 4,345,193 - ppiA LU632_RS22820 0.60 -0.4 4,345,222 + ppiA LU632_RS22820 0.65 -0.3 4,345,229 - ppiA LU632_RS22820 0.66 -0.3 4,345,229 - ppiA LU632_RS22820 0.66 +0.7 4,345,230 + ppiA LU632_RS22820 0.66 -0.5 4,345,322 - ppiA LU632_RS22820 0.82 +0.2 4,345,411 + +0.5 4,345,441 - +0.1 4,345,509 + -0.3 4,345,510 - -0.2 4,345,525 + -0.3 4,345,526 - -0.1 4,345,531 + +0.3 4,345,557 + -0.2 4,345,558 - +0.9 4,345,561 + -0.5 4,345,561 + +0.3 4,345,562 - -0.2 4,345,563 + +0.5 4,345,564 - -1.1 4,345,585 + +0.4 4,345,585 + +0.9 4,345,585 + +0.2 4,345,585 + +0.1 4,345,585 + -0.1 4,345,588 + +0.9 4,345,614 + -0.6 4,345,615 - -0.7 4,345,615 - -0.7 4,345,746 + +1.2 4,345,746 + +0.6 4,345,796 + +0.1 4,345,797 - +0.3 4,345,806 + -0.3 4,345,807 - +1.9 4,345,925 - tsgA LU632_RS22825 0.19 +0.4 4,345,943 - tsgA LU632_RS22825 0.21 +0.3 4,345,943 - tsgA LU632_RS22825 0.21 +0.1 4,346,011 + tsgA LU632_RS22825 0.26 -0.1 4,346,012 - tsgA LU632_RS22825 0.26 -0.1 4,346,020 + tsgA LU632_RS22825 0.27 +0.4 4,346,021 - tsgA LU632_RS22825 0.27 -1.7 4,346,070 + tsgA LU632_RS22825 0.31 +0.8 4,346,194 - tsgA LU632_RS22825 0.42 +0.5 4,346,201 + tsgA LU632_RS22825 0.42 -0.1 4,346,207 - tsgA LU632_RS22825 0.43 +0.1 4,346,346 + tsgA LU632_RS22825 0.55 +0.9 4,346,346 + tsgA LU632_RS22825 0.55 -0.4 4,346,346 + tsgA LU632_RS22825 0.55 +0.1 4,346,347 - tsgA LU632_RS22825 0.55 -0.1 4,346,347 - tsgA LU632_RS22825 0.55 +0.1 4,346,389 - tsgA LU632_RS22825 0.58 +0.2 4,346,397 - tsgA LU632_RS22825 0.59 -0.0 4,346,457 + tsgA LU632_RS22825 0.64 +0.6 4,346,458 - tsgA LU632_RS22825 0.64 +0.4 4,346,458 - tsgA LU632_RS22825 0.64 +0.9 4,346,458 - tsgA LU632_RS22825 0.64 +0.5 4,346,459 + tsgA LU632_RS22825 0.64 +0.4 4,346,459 + tsgA LU632_RS22825 0.64 -0.1 4,346,459 + tsgA LU632_RS22825 0.64 +0.4 4,346,459 + tsgA LU632_RS22825 0.64 +0.0 4,346,460 - tsgA LU632_RS22825 0.64 +0.4 4,346,460 - tsgA LU632_RS22825 0.64 +0.2 4,346,460 - tsgA LU632_RS22825 0.64 +1.2 4,346,460 - tsgA LU632_RS22825 0.64 +0.6 4,346,513 + tsgA LU632_RS22825 0.69 +0.4 4,346,519 + tsgA LU632_RS22825 0.69 -0.1 4,346,553 + tsgA LU632_RS22825 0.72 +0.1 4,346,567 + tsgA LU632_RS22825 0.73 +1.2 4,346,597 + tsgA LU632_RS22825 0.76 +1.1 4,346,627 + tsgA LU632_RS22825 0.78 +0.2 4,346,627 + tsgA LU632_RS22825 0.78 -0.5 4,346,628 - tsgA LU632_RS22825 0.78 +0.4 4,346,631 + tsgA LU632_RS22825 0.79 +1.0 4,346,631 + tsgA LU632_RS22825 0.79 +0.8 4,346,787 - +1.1 4,346,816 + +0.1 4,346,816 + -0.9 4,346,816 + -0.7 4,346,817 - +0.8 4,346,817 - -0.5 4,346,891 - +0.3 4,346,965 + -0.6 4,347,023 - -0.2 4,347,108 - LU632_RS22830 0.14 -0.5 4,347,108 - LU632_RS22830 0.14 -0.5 4,347,108 - LU632_RS22830 0.14 -0.0 4,347,126 + LU632_RS22830 0.15 -0.1 4,347,126 + LU632_RS22830 0.15 +0.4 4,347,127 - LU632_RS22830 0.16 +0.4 4,347,127 - LU632_RS22830 0.16 +0.8 4,347,132 + LU632_RS22830 0.16 -0.1 4,347,132 + LU632_RS22830 0.16 -0.7 4,347,220 + LU632_RS22830 0.23 -0.6 4,347,221 - LU632_RS22830 0.23 +0.3 4,347,232 - LU632_RS22830 0.24 +0.4 4,347,232 - LU632_RS22830 0.24 -0.5 4,347,232 - LU632_RS22830 0.24 -0.2 4,347,252 - LU632_RS22830 0.25 +0.1 4,347,344 + LU632_RS22830 0.33 -1.3 4,347,344 + LU632_RS22830 0.33 -0.5 4,347,349 - LU632_RS22830 0.33 -0.6 4,347,349 - LU632_RS22830 0.33 +0.6 4,347,438 + LU632_RS22830 0.40 +0.1 4,347,438 + LU632_RS22830 0.40 -2.4 4,347,438 + LU632_RS22830 0.40 -0.2 4,347,438 + LU632_RS22830 0.40 +0.2 4,347,438 + LU632_RS22830 0.40 +0.7 4,347,438 + LU632_RS22830 0.40 +1.4 4,347,439 - LU632_RS22830 0.40 +0.6 4,347,439 - LU632_RS22830 0.40 -0.5 4,347,439 - LU632_RS22830 0.40 -0.0 4,347,440 + LU632_RS22830 0.40 -0.3 4,347,440 + LU632_RS22830 0.40 +0.5 4,347,453 - LU632_RS22830 0.41 -0.0 4,347,582 + LU632_RS22830 0.51 -1.2 4,347,583 - LU632_RS22830 0.51 -1.7 4,347,583 - LU632_RS22830 0.51 -1.4 4,347,587 + LU632_RS22830 0.52 -0.4 4,347,587 + LU632_RS22830 0.52 -0.3 4,347,590 + LU632_RS22830 0.52 -0.9 4,347,591 - LU632_RS22830 0.52 -0.7 4,347,591 - LU632_RS22830 0.52 -1.0 4,347,741 - LU632_RS22830 0.64 -0.5
Or see this region's nucleotide sequence