Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS20720

Experiment: MJM9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttsaD and rpsU are separated by 304 nucleotidesrpsU and dnaG are separated by 99 nucleotidesdnaG and rpoD are separated by 310 nucleotides LU632_RS20710: tsaD - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD, at 3,948,861 to 3,949,883 tsaD LU632_RS20715: rpsU - 30S ribosomal protein S21, at 3,950,188 to 3,950,403 rpsU LU632_RS20720: dnaG - DNA primase, at 3,950,503 to 3,952,260 dnaG LU632_RS20725: rpoD - RNA polymerase sigma factor RpoD, at 3,952,571 to 3,954,412 rpoD Position (kb) 3950 3951 3952 3953Strain fitness (log2 ratio) -2 -1 0 1at 3950.014 kb on + strandat 3950.019 kb on + strandat 3950.019 kb on + strandat 3950.020 kb on - strandat 3950.020 kb on - strandat 3950.020 kb on - strandat 3950.020 kb on - strandat 3950.080 kb on + strandat 3950.426 kb on + strandat 3950.429 kb on + strandat 3950.434 kb on + strandat 3950.434 kb on + strandat 3952.281 kb on + strandat 3952.347 kb on + strandat 3952.374 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MJM9
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3,950,014 + -0.1
3,950,019 + -2.1
3,950,019 + +0.8
3,950,020 - -0.7
3,950,020 - +0.4
3,950,020 - +0.4
3,950,020 - +0.2
3,950,080 + -0.0
3,950,426 + -0.1
3,950,429 + -1.1
3,950,434 + -1.2
3,950,434 + -0.4
3,952,281 + -0.2
3,952,347 + -0.1
3,952,374 + -1.1

Or see this region's nucleotide sequence