Experiment: MJM9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS19425 and LU632_RS19430 are separated by 842 nucleotides LU632_RS19430 and LU632_RS19435 overlap by 82 nucleotides LU632_RS19435 and LU632_RS19440 are separated by 314 nucleotides
LU632_RS19425: LU632_RS19425 - inverse autotransporter beta domain-containing protein, at 3,676,454 to 3,679,234
_RS19425
LU632_RS19430: LU632_RS19430 - IS1 family transposase, at 3,680,077 to 3,680,580
_RS19430
LU632_RS19435: LU632_RS19435 - transposase, at 3,680,499 to 3,680,774
_RS19435
LU632_RS19440: LU632_RS19440 - IS5 family transposase, at 3,681,089 to 3,681,866
_RS19440
Position (kb)
3680
3681 Strain fitness (log2 ratio)
-1
0
1 at 3680.047 kb on - strand at 3680.061 kb on - strand at 3680.799 kb on + strand at 3680.937 kb on - strand at 3680.950 kb on - strand at 3680.951 kb on + strand at 3680.951 kb on + strand at 3680.952 kb on - strand at 3680.952 kb on - strand at 3680.953 kb on + strand at 3680.954 kb on - strand at 3680.954 kb on - strand at 3681.009 kb on - strand at 3681.056 kb on - strand at 3681.056 kb on - strand at 3681.058 kb on - strand at 3681.276 kb on + strand, within LU632_RS19440
Per-strain Table
Position Strand Gene LocusTag Fraction MJM9 remove 3,680,047 - -0.0 3,680,061 - +0.1 3,680,799 + +0.5 3,680,937 - +0.7 3,680,950 - -0.3 3,680,951 + +0.4 3,680,951 + -0.1 3,680,952 - +0.6 3,680,952 - -0.5 3,680,953 + -0.1 3,680,954 - +0.5 3,680,954 - +0.8 3,681,009 - +0.5 3,681,056 - +0.2 3,681,056 - -0.3 3,681,058 - -0.0 3,681,276 + LU632_RS19440 0.24 +0.3
Or see this region's nucleotide sequence