Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS18905

Experiment: MJM9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS18900 and LU632_RS18905 are separated by 239 nucleotidesLU632_RS18905 and LU632_RS18910 overlap by 14 nucleotidesLU632_RS18910 and LU632_RS18915 are separated by 490 nucleotides LU632_RS18900: LU632_RS18900 - 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase, at 3,565,432 to 3,566,517 _RS18900 LU632_RS18905: LU632_RS18905 - hypothetical protein, at 3,566,757 to 3,567,098 _RS18905 LU632_RS18910: LU632_RS18910 - hypothetical protein, at 3,567,085 to 3,567,561 _RS18910 LU632_RS18915: LU632_RS18915 - IS1 family transposase, at 3,568,052 to 3,568,686 _RS18915 Position (kb) 3566 3567 3568Strain fitness (log2 ratio) -2 -1 0 1at 3565.837 kb on + strand, within LU632_RS18900at 3565.862 kb on + strand, within LU632_RS18900at 3565.879 kb on + strand, within LU632_RS18900at 3565.879 kb on + strand, within LU632_RS18900at 3565.880 kb on - strand, within LU632_RS18900at 3565.982 kb on - strand, within LU632_RS18900at 3566.156 kb on + strand, within LU632_RS18900at 3566.168 kb on - strand, within LU632_RS18900at 3566.238 kb on - strand, within LU632_RS18900at 3566.264 kb on - strand, within LU632_RS18900at 3566.392 kb on + strand, within LU632_RS18900at 3566.392 kb on + strand, within LU632_RS18900at 3566.796 kb on - strand, within LU632_RS18905at 3567.251 kb on - strand, within LU632_RS18910at 3567.251 kb on - strand, within LU632_RS18910at 3567.311 kb on - strand, within LU632_RS18910at 3567.732 kb on - strandat 3567.768 kb on + strandat 3567.769 kb on - strandat 3567.769 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MJM9
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3,565,837 + LU632_RS18900 0.37 +0.5
3,565,862 + LU632_RS18900 0.40 -0.8
3,565,879 + LU632_RS18900 0.41 -0.2
3,565,879 + LU632_RS18900 0.41 -2.0
3,565,880 - LU632_RS18900 0.41 +0.6
3,565,982 - LU632_RS18900 0.51 +1.0
3,566,156 + LU632_RS18900 0.67 -0.7
3,566,168 - LU632_RS18900 0.68 -1.0
3,566,238 - LU632_RS18900 0.74 -0.8
3,566,264 - LU632_RS18900 0.77 +0.2
3,566,392 + LU632_RS18900 0.88 -0.8
3,566,392 + LU632_RS18900 0.88 +0.6
3,566,796 - LU632_RS18905 0.11 +0.8
3,567,251 - LU632_RS18910 0.35 +1.1
3,567,251 - LU632_RS18910 0.35 -0.2
3,567,311 - LU632_RS18910 0.47 +0.0
3,567,732 - -0.2
3,567,768 + -0.0
3,567,769 - -0.2
3,567,769 - +0.4

Or see this region's nucleotide sequence