Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS16820

Experiment: MJM9

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MJM9
3,167,193	+	nrdF	LU632_RS16815	0.38	-0.4
3,167,193	+	nrdF	LU632_RS16815	0.38	-0.2
3,167,193	+	nrdF	LU632_RS16815	0.38	+0.2
3,167,193	+	nrdF	LU632_RS16815	0.38	+1.0
3,167,194	-	nrdF	LU632_RS16815	0.38	-0.7
3,167,229	-	nrdF	LU632_RS16815	0.42	+0.0
3,167,229	-	nrdF	LU632_RS16815	0.42	-0.7
3,167,229	-	nrdF	LU632_RS16815	0.42	-0.0
3,167,229	-	nrdF	LU632_RS16815	0.42	-1.1
3,167,254	-	nrdF	LU632_RS16815	0.44	+0.7
3,167,257	-	nrdF	LU632_RS16815	0.44	+0.8
3,167,317	-	nrdF	LU632_RS16815	0.51	+0.6
3,167,328	+	nrdF	LU632_RS16815	0.52	+0.4
3,167,410	+	nrdF	LU632_RS16815	0.60	+0.2
3,167,418	+	nrdF	LU632_RS16815	0.61	+0.4
3,167,421	+	nrdF	LU632_RS16815	0.62	+0.2
3,167,421	+	nrdF	LU632_RS16815	0.62	-0.2
3,167,422	-	nrdF	LU632_RS16815	0.62	+1.0
3,167,422	-	nrdF	LU632_RS16815	0.62	+0.0
3,167,431	-	nrdF	LU632_RS16815	0.63	+0.0
3,167,433	-	nrdF	LU632_RS16815	0.63	-1.5
3,167,504	-	nrdF	LU632_RS16815	0.70	-0.2
3,167,513	-	nrdF	LU632_RS16815	0.71	-0.8
3,167,515	+	nrdF	LU632_RS16815	0.71	-1.0
3,167,515	+	nrdF	LU632_RS16815	0.71	-0.1
3,167,516	-	nrdF	LU632_RS16815	0.71	+0.6
3,167,516	-	nrdF	LU632_RS16815	0.71	+0.3
3,167,516	-	nrdF	LU632_RS16815	0.71	-0.9
3,167,516	-	nrdF	LU632_RS16815	0.71	+0.6
3,167,551	-	nrdF	LU632_RS16815	0.75	+0.2
3,167,597	+	nrdF	LU632_RS16815	0.80	-0.1
3,167,598	-	nrdF	LU632_RS16815	0.80	+0.0
3,167,598	-	nrdF	LU632_RS16815	0.80	-0.0
3,167,598	-	nrdF	LU632_RS16815	0.80	-1.0
3,167,606	+	nrdF	LU632_RS16815	0.81	+1.6
3,167,653	+	nrdF	LU632_RS16815	0.86	+1.6
3,167,759	-				+0.7
3,167,867	-				-0.7
3,167,950	-				+0.7
3,168,089	-				+0.3
3,168,157	+				+0.1
3,168,333	+	proV	LU632_RS16820	0.14	-0.2
3,168,450	+	proV	LU632_RS16820	0.24	-1.1
3,168,538	-	proV	LU632_RS16820	0.31	-1.3
3,168,564	-	proV	LU632_RS16820	0.33	+0.7
3,168,613	-	proV	LU632_RS16820	0.37	-0.6
3,168,613	-	proV	LU632_RS16820	0.37	+0.2
3,168,721	-	proV	LU632_RS16820	0.46	-0.7
3,168,721	-	proV	LU632_RS16820	0.46	+1.0
3,168,723	+	proV	LU632_RS16820	0.46	+0.2
3,168,723	+	proV	LU632_RS16820	0.46	+0.3
3,168,723	+	proV	LU632_RS16820	0.46	-0.1
3,168,723	+	proV	LU632_RS16820	0.46	+0.3
3,168,822	+	proV	LU632_RS16820	0.55	+0.2
3,168,823	-	proV	LU632_RS16820	0.55	+0.8
3,168,856	+	proV	LU632_RS16820	0.57	-0.5
3,168,871	-	proV	LU632_RS16820	0.59	+0.3
3,168,944	+	proV	LU632_RS16820	0.65	+0.6
3,168,949	-	proV	LU632_RS16820	0.65	+0.2
3,168,949	-	proV	LU632_RS16820	0.65	+0.3
3,168,952	+	proV	LU632_RS16820	0.65	-0.1
3,168,953	-	proV	LU632_RS16820	0.66	+0.7
3,168,953	-	proV	LU632_RS16820	0.66	+0.6
3,168,970	-	proV	LU632_RS16820	0.67	+1.0
3,168,973	+	proV	LU632_RS16820	0.67	-0.6
3,169,001	-	proV	LU632_RS16820	0.69	-0.1
3,169,034	-	proV	LU632_RS16820	0.72	-0.0
3,169,298	+				+0.1
3,169,299	-				-0.3
3,169,299	-				+1.0
3,169,299	-				+1.3
3,169,300	+				+0.3
3,169,301	-				-0.6
3,169,301	-				-0.5
3,169,315	+				-1.3
3,169,327	-				-0.5
3,169,330	-				-0.2
3,169,330	-				+0.5
3,169,330	-				-0.5
3,169,338	+				-0.3
3,169,610	+	proW	LU632_RS16825	0.22	+0.3
3,169,610	+	proW	LU632_RS16825	0.22	-0.1
3,169,614	-	proW	LU632_RS16825	0.22	-1.6
3,169,631	+	proW	LU632_RS16825	0.23	+0.7
3,169,731	+	proW	LU632_RS16825	0.32	-0.1
3,169,731	+	proW	LU632_RS16825	0.32	-0.3
3,169,731	+	proW	LU632_RS16825	0.32	-0.4
3,169,731	+	proW	LU632_RS16825	0.32	+1.0
3,169,732	-	proW	LU632_RS16825	0.32	+0.4
3,169,732	-	proW	LU632_RS16825	0.32	-0.1
3,169,804	+	proW	LU632_RS16825	0.38	+0.4
3,169,991	+	proW	LU632_RS16825	0.54	-0.2
3,169,991	+	proW	LU632_RS16825	0.54	+0.4
3,169,991	+	proW	LU632_RS16825	0.54	+0.5
3,169,991	+	proW	LU632_RS16825	0.54	-0.2
3,169,991	+	proW	LU632_RS16825	0.54	-0.6
3,169,992	-	proW	LU632_RS16825	0.54	-0.6
3,169,992	-	proW	LU632_RS16825	0.54	+0.1
3,170,096	-	proW	LU632_RS16825	0.63	+1.8
3,170,102	+	proW	LU632_RS16825	0.64	-1.0
3,170,103	-	proW	LU632_RS16825	0.64	-1.1
3,170,103	-	proW	LU632_RS16825	0.64	-0.1
3,170,122	+	proW	LU632_RS16825	0.66	-0.5
3,170,122	+	proW	LU632_RS16825	0.66	+0.6
3,170,126	-	proW	LU632_RS16825	0.66	+0.1
3,170,126	-	proW	LU632_RS16825	0.66	+0.1
3,170,144	+	proW	LU632_RS16825	0.67	-0.4
3,170,148	-	proW	LU632_RS16825	0.68	+1.3
3,170,261	+	proW	LU632_RS16825	0.77	-0.6