Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS10540

Experiment: MJM9

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MJM9
2,012,861	+	fliP	LU632_RS10525	0.73	+0.3
2,013,009	+				+0.1
2,013,009	+				+1.6
2,013,009	+				+0.2
2,013,010	-				+0.0
2,013,010	-				-0.0
2,013,034	-				+0.6
2,013,034	-				-0.5
2,013,053	+				-0.2
2,013,054	-				-1.0
2,013,082	+				+0.6
2,013,083	-				-0.4
2,013,086	+				+1.0
2,013,087	-				+0.3
2,013,172	+	fliO	LU632_RS10530	0.29	+0.0
2,013,173	-	fliO	LU632_RS10530	0.29	-0.0
2,013,269	+	fliO	LU632_RS10530	0.53	-0.1
2,013,335	+	fliO	LU632_RS10530	0.70	+0.9
2,013,336	-	fliO	LU632_RS10530	0.70	-0.2
2,013,349	+	fliO	LU632_RS10530	0.73	+1.5
2,013,349	+	fliO	LU632_RS10530	0.73	+0.1
2,013,349	+	fliO	LU632_RS10530	0.73	+1.8
2,013,349	+	fliO	LU632_RS10530	0.73	-1.0
2,013,350	-	fliO	LU632_RS10530	0.73	+0.9
2,013,362	+	fliO	LU632_RS10530	0.77	-0.3
2,013,448	+				-0.1
2,013,449	-				-0.2
2,013,449	-				-0.4
2,013,517	+	fliN	LU632_RS10535	0.15	-1.3
2,013,644	+	fliN	LU632_RS10535	0.46	+0.2
2,013,923	+				-1.0
2,013,924	-				-0.8
2,013,924	-				-0.1
2,013,924	-				-0.5
2,013,956	-	fliM	LU632_RS10540	0.10	-0.8
2,014,012	+	fliM	LU632_RS10540	0.16	-0.0
2,014,012	+	fliM	LU632_RS10540	0.16	-1.1
2,014,012	+	fliM	LU632_RS10540	0.16	+1.9
2,014,013	-	fliM	LU632_RS10540	0.16	-0.2
2,014,013	-	fliM	LU632_RS10540	0.16	+0.0
2,014,013	-	fliM	LU632_RS10540	0.16	-0.1
2,014,047	+	fliM	LU632_RS10540	0.19	-0.3
2,014,048	+	fliM	LU632_RS10540	0.19	-0.7
2,014,048	-	fliM	LU632_RS10540	0.19	-0.9
2,014,127	+	fliM	LU632_RS10540	0.27	+0.4
2,014,127	+	fliM	LU632_RS10540	0.27	-0.5
2,014,128	-	fliM	LU632_RS10540	0.27	-0.2
2,014,131	+	fliM	LU632_RS10540	0.28	-1.3
2,014,131	+	fliM	LU632_RS10540	0.28	-0.2
2,014,261	-	fliM	LU632_RS10540	0.40	+0.7
2,014,325	+	fliM	LU632_RS10540	0.47	-0.2
2,014,326	-	fliM	LU632_RS10540	0.47	+0.3
2,014,326	-	fliM	LU632_RS10540	0.47	-0.4
2,014,326	-	fliM	LU632_RS10540	0.47	-0.0
2,014,367	+	fliM	LU632_RS10540	0.51	-0.3
2,014,561	-	fliM	LU632_RS10540	0.70	-0.5
2,014,596	-	fliM	LU632_RS10540	0.74	+0.6
2,014,662	+	fliM	LU632_RS10540	0.80	-0.8
2,014,663	-	fliM	LU632_RS10540	0.80	-0.5
2,014,726	-	fliM	LU632_RS10540	0.87	+0.7
2,014,867	-				+0.5
2,014,951	+	fliL	LU632_RS10545	0.18	-0.1
2,015,075	-	fliL	LU632_RS10545	0.43	-0.5
2,015,109	+	fliL	LU632_RS10545	0.51	-0.7
2,015,109	+	fliL	LU632_RS10545	0.51	+0.2
2,015,109	+	fliL	LU632_RS10545	0.51	+1.8
2,015,109	+	fliL	LU632_RS10545	0.51	-0.2
2,015,109	+	fliL	LU632_RS10545	0.51	-0.5
2,015,110	-	fliL	LU632_RS10545	0.51	+0.1
2,015,276	+	fliL	LU632_RS10545	0.85	+0.1
2,015,276	+	fliL	LU632_RS10545	0.85	-1.0
2,015,276	+	fliL	LU632_RS10545	0.85	-0.2
2,015,280	-	fliL	LU632_RS10545	0.86	+1.0
2,015,282	+	fliL	LU632_RS10545	0.86	-0.2
2,015,314	+				-0.6
2,015,315	-				-0.8
2,015,347	+				-1.0
2,015,357	-				-0.2
2,015,444	+				+1.4
2,015,445	-				+0.1
2,015,512	-				-0.3
2,015,601	+				+1.3
2,015,607	+				+1.0
2,015,607	+				-0.3
2,015,607	+				+0.5
2,015,608	-				-1.0
2,015,608	-				+0.8
2,015,608	-				+1.0
2,015,623	-				-0.3
2,015,731	+		LU632_RS10550	0.17	-0.0
2,015,787	+		LU632_RS10550	0.22	+0.7
2,015,788	-		LU632_RS10550	0.22	-0.2
2,015,854	+		LU632_RS10550	0.27	-1.3
2,015,854	+		LU632_RS10550	0.27	+1.5
2,015,854	+		LU632_RS10550	0.27	+1.6
2,015,854	+		LU632_RS10550	0.27	+0.1
2,015,855	-		LU632_RS10550	0.27	-0.3
2,015,855	-		LU632_RS10550	0.27	+0.2
2,015,855	-		LU632_RS10550	0.27	-0.3