Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08955

Experiment: MJM9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nthisG and hisL are separated by 164 nucleotideshisL and LU632_RS08960 are separated by 179 nucleotides LU632_RS08950: hisG - ATP phosphoribosyltransferase, at 1,689,642 to 1,690,541 hisG LU632_RS08955: hisL - his operon leader peptide, at 1,690,706 to 1,690,753 hisL LU632_RS08960: LU632_RS08960 - SDR family oxidoreductase, at 1,690,933 to 1,691,757 _RS08960 Position (kb) 1690 1691Strain fitness (log2 ratio) -1 0 1at 1689.743 kb on + strand, within hisGat 1689.743 kb on + strand, within hisGat 1689.783 kb on + strand, within hisGat 1689.857 kb on + strand, within hisGat 1689.857 kb on + strand, within hisGat 1689.857 kb on + strand, within hisGat 1689.858 kb on - strand, within hisGat 1689.859 kb on + strand, within hisGat 1689.860 kb on - strand, within hisGat 1689.883 kb on - strand, within hisGat 1689.909 kb on - strand, within hisGat 1689.913 kb on - strand, within hisGat 1689.976 kb on + strand, within hisGat 1689.977 kb on - strand, within hisGat 1690.103 kb on + strand, within hisGat 1690.130 kb on - strand, within hisGat 1690.130 kb on - strand, within hisGat 1690.196 kb on - strand, within hisGat 1690.196 kb on - strand, within hisGat 1690.395 kb on - strand, within hisGat 1690.422 kb on + strand, within hisGat 1690.511 kb on + strandat 1690.512 kb on - strandat 1690.515 kb on + strandat 1690.515 kb on + strandat 1690.516 kb on - strandat 1690.536 kb on + strandat 1690.536 kb on + strandat 1690.545 kb on - strandat 1690.545 kb on - strandat 1690.776 kb on - strandat 1690.780 kb on - strandat 1690.895 kb on - strandat 1690.913 kb on + strandat 1691.154 kb on + strand, within LU632_RS08960at 1691.155 kb on - strand, within LU632_RS08960at 1691.279 kb on + strand, within LU632_RS08960at 1691.523 kb on + strand, within LU632_RS08960at 1691.525 kb on + strand, within LU632_RS08960at 1691.563 kb on + strand, within LU632_RS08960at 1691.572 kb on - strand, within LU632_RS08960at 1691.572 kb on - strand, within LU632_RS08960at 1691.605 kb on + strand, within LU632_RS08960at 1691.700 kb on - strandat 1691.700 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MJM9
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1,689,743 + hisG LU632_RS08950 0.11 +0.2
1,689,743 + hisG LU632_RS08950 0.11 +0.5
1,689,783 + hisG LU632_RS08950 0.16 -0.0
1,689,857 + hisG LU632_RS08950 0.24 +0.3
1,689,857 + hisG LU632_RS08950 0.24 +0.4
1,689,857 + hisG LU632_RS08950 0.24 +0.4
1,689,858 - hisG LU632_RS08950 0.24 +1.1
1,689,859 + hisG LU632_RS08950 0.24 -1.1
1,689,860 - hisG LU632_RS08950 0.24 -0.2
1,689,883 - hisG LU632_RS08950 0.27 +0.0
1,689,909 - hisG LU632_RS08950 0.30 -0.3
1,689,913 - hisG LU632_RS08950 0.30 -0.1
1,689,976 + hisG LU632_RS08950 0.37 +0.5
1,689,977 - hisG LU632_RS08950 0.37 +0.1
1,690,103 + hisG LU632_RS08950 0.51 +0.4
1,690,130 - hisG LU632_RS08950 0.54 -0.5
1,690,130 - hisG LU632_RS08950 0.54 +0.8
1,690,196 - hisG LU632_RS08950 0.62 +1.0
1,690,196 - hisG LU632_RS08950 0.62 -0.3
1,690,395 - hisG LU632_RS08950 0.84 +0.6
1,690,422 + hisG LU632_RS08950 0.87 +0.7
1,690,511 + -0.4
1,690,512 - +0.4
1,690,515 + +0.7
1,690,515 + -0.6
1,690,516 - -1.1
1,690,536 + +0.5
1,690,536 + +1.5
1,690,545 - -0.3
1,690,545 - +0.2
1,690,776 - +0.1
1,690,780 - +0.1
1,690,895 - +0.2
1,690,913 + -0.6
1,691,154 + LU632_RS08960 0.27 -0.8
1,691,155 - LU632_RS08960 0.27 +0.2
1,691,279 + LU632_RS08960 0.42 +0.3
1,691,523 + LU632_RS08960 0.72 -0.5
1,691,525 + LU632_RS08960 0.72 +1.0
1,691,563 + LU632_RS08960 0.76 -0.8
1,691,572 - LU632_RS08960 0.77 -0.1
1,691,572 - LU632_RS08960 0.77 -0.4
1,691,605 + LU632_RS08960 0.81 +1.0
1,691,700 - +0.9
1,691,700 - +0.9

Or see this region's nucleotide sequence