Experiment: MJM9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS05220 and LU632_RS05225 are separated by 9 nucleotides LU632_RS05225 and LU632_RS05230 overlap by 4 nucleotides
LU632_RS05220: LU632_RS05220 - integrating conjugative element protein, at 1,009,514 to 1,010,941
_RS05220
LU632_RS05225: LU632_RS05225 - hypothetical protein, at 1,010,951 to 1,011,289
_RS05225
LU632_RS05230: LU632_RS05230 - conjugal transfer protein TraG N-terminal domain-containing protein, at 1,011,286 to 1,012,821
_RS05230
Position (kb) 1010
1011
1012 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1010.143 kb on + strand, within LU632_RS05220 at 1010.224 kb on + strand, within LU632_RS05220 at 1010.365 kb on + strand, within LU632_RS05220 at 1010.366 kb on - strand, within LU632_RS05220 at 1010.474 kb on - strand, within LU632_RS05220 at 1010.474 kb on - strand, within LU632_RS05220 at 1010.735 kb on - strand, within LU632_RS05220 at 1010.735 kb on - strand, within LU632_RS05220 at 1010.752 kb on + strand, within LU632_RS05220 at 1010.753 kb on - strand, within LU632_RS05220 at 1010.753 kb on - strand, within LU632_RS05220 at 1010.893 kb on + strand at 1010.959 kb on + strand at 1010.960 kb on - strand at 1011.023 kb on - strand, within LU632_RS05225 at 1011.141 kb on - strand, within LU632_RS05225 at 1011.142 kb on + strand, within LU632_RS05225 at 1011.301 kb on + strand at 1011.301 kb on + strand at 1011.302 kb on - strand at 1011.302 kb on - strand at 1011.310 kb on + strand at 1011.340 kb on - strand at 1011.400 kb on - strand at 1011.453 kb on + strand, within LU632_RS05230 at 1011.494 kb on - strand, within LU632_RS05230 at 1011.693 kb on + strand, within LU632_RS05230 at 1011.693 kb on + strand, within LU632_RS05230 at 1011.693 kb on + strand, within LU632_RS05230 at 1011.694 kb on - strand, within LU632_RS05230 at 1011.762 kb on - strand, within LU632_RS05230 at 1011.853 kb on + strand, within LU632_RS05230 at 1011.853 kb on + strand, within LU632_RS05230 at 1011.950 kb on - strand, within LU632_RS05230 at 1012.050 kb on + strand, within LU632_RS05230 at 1012.051 kb on - strand, within LU632_RS05230 at 1012.051 kb on - strand, within LU632_RS05230 at 1012.238 kb on + strand, within LU632_RS05230 at 1012.238 kb on + strand, within LU632_RS05230 at 1012.238 kb on + strand, within LU632_RS05230 at 1012.238 kb on + strand, within LU632_RS05230 at 1012.238 kb on + strand, within LU632_RS05230 at 1012.238 kb on + strand, within LU632_RS05230 at 1012.239 kb on - strand, within LU632_RS05230 at 1012.239 kb on - strand, within LU632_RS05230 at 1012.239 kb on - strand, within LU632_RS05230 at 1012.239 kb on - strand, within LU632_RS05230 at 1012.239 kb on - strand, within LU632_RS05230 at 1012.241 kb on - strand, within LU632_RS05230
Per-strain Table
Position Strand Gene LocusTag Fraction MJM9 remove 1,010,143 + LU632_RS05220 0.44 +0.7 1,010,224 + LU632_RS05220 0.50 -0.3 1,010,365 + LU632_RS05220 0.60 +0.1 1,010,366 - LU632_RS05220 0.60 -0.5 1,010,474 - LU632_RS05220 0.67 +1.0 1,010,474 - LU632_RS05220 0.67 -0.5 1,010,735 - LU632_RS05220 0.86 +0.2 1,010,735 - LU632_RS05220 0.86 -0.3 1,010,752 + LU632_RS05220 0.87 -1.3 1,010,753 - LU632_RS05220 0.87 -1.0 1,010,753 - LU632_RS05220 0.87 -0.2 1,010,893 + -0.1 1,010,959 + -0.3 1,010,960 - +0.1 1,011,023 - LU632_RS05225 0.21 -0.8 1,011,141 - LU632_RS05225 0.56 -0.7 1,011,142 + LU632_RS05225 0.56 +1.0 1,011,301 + -0.1 1,011,301 + -2.3 1,011,302 - -1.7 1,011,302 - +0.1 1,011,310 + +1.1 1,011,340 - +2.3 1,011,400 - -0.2 1,011,453 + LU632_RS05230 0.11 +0.0 1,011,494 - LU632_RS05230 0.14 -0.1 1,011,693 + LU632_RS05230 0.26 +0.9 1,011,693 + LU632_RS05230 0.26 +0.6 1,011,693 + LU632_RS05230 0.26 +2.6 1,011,694 - LU632_RS05230 0.27 +0.2 1,011,762 - LU632_RS05230 0.31 -0.2 1,011,853 + LU632_RS05230 0.37 -0.3 1,011,853 + LU632_RS05230 0.37 +0.1 1,011,950 - LU632_RS05230 0.43 +0.1 1,012,050 + LU632_RS05230 0.50 -0.3 1,012,051 - LU632_RS05230 0.50 +0.5 1,012,051 - LU632_RS05230 0.50 +0.1 1,012,238 + LU632_RS05230 0.62 -0.3 1,012,238 + LU632_RS05230 0.62 -0.7 1,012,238 + LU632_RS05230 0.62 -0.0 1,012,238 + LU632_RS05230 0.62 +0.4 1,012,238 + LU632_RS05230 0.62 +0.1 1,012,238 + LU632_RS05230 0.62 +0.1 1,012,239 - LU632_RS05230 0.62 -0.3 1,012,239 - LU632_RS05230 0.62 -0.6 1,012,239 - LU632_RS05230 0.62 -0.8 1,012,239 - LU632_RS05230 0.62 -0.0 1,012,239 - LU632_RS05230 0.62 -0.0 1,012,241 - LU632_RS05230 0.62 +0.6
Or see this region's nucleotide sequence