Experiment: MJM9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04890 and LU632_RS04895 are separated by 77 nucleotides LU632_RS04895 and LU632_RS04900 are separated by 12 nucleotides LU632_RS04900 and LU632_RS04905 are separated by 13 nucleotides LU632_RS04905 and LU632_RS04910 overlap by 20 nucleotides
LU632_RS04890: LU632_RS04890 - STY4534 family ICE replication protein, at 956,410 to 956,874
_RS04890
LU632_RS04895: LU632_RS04895 - hypothetical protein, at 956,952 to 957,155
_RS04895
LU632_RS04900: LU632_RS04900 - single-stranded DNA-binding protein, at 957,168 to 957,757
_RS04900
LU632_RS04905: LU632_RS04905 - DUF4160 domain-containing protein, at 957,771 to 958,007
_RS04905
LU632_RS04910: LU632_RS04910 - DUF2442 domain-containing protein, at 957,988 to 958,251
_RS04910
Position (kb) 956
957
958 Strain fitness (log2 ratio) -2
-1
0
1
2 at 955.995 kb on - strand at 956.108 kb on + strand at 956.108 kb on + strand at 956.207 kb on - strand at 956.219 kb on - strand at 956.219 kb on - strand at 956.265 kb on + strand at 956.319 kb on + strand at 956.378 kb on + strand at 956.379 kb on - strand at 956.383 kb on + strand at 956.390 kb on - strand at 956.424 kb on + strand at 956.446 kb on + strand at 956.494 kb on + strand, within LU632_RS04890 at 956.569 kb on + strand, within LU632_RS04890 at 956.569 kb on + strand, within LU632_RS04890 at 956.569 kb on + strand, within LU632_RS04890 at 956.570 kb on - strand, within LU632_RS04890 at 956.706 kb on + strand, within LU632_RS04890 at 956.759 kb on + strand, within LU632_RS04890 at 956.781 kb on - strand, within LU632_RS04890 at 956.797 kb on + strand, within LU632_RS04890 at 956.798 kb on - strand, within LU632_RS04890 at 956.798 kb on - strand, within LU632_RS04890 at 956.799 kb on + strand, within LU632_RS04890 at 956.799 kb on + strand, within LU632_RS04890 at 956.800 kb on - strand, within LU632_RS04890 at 956.839 kb on - strand at 956.936 kb on - strand at 956.939 kb on - strand at 957.033 kb on + strand, within LU632_RS04895 at 957.033 kb on + strand, within LU632_RS04895 at 957.034 kb on - strand, within LU632_RS04895 at 957.034 kb on - strand, within LU632_RS04895 at 957.034 kb on - strand, within LU632_RS04895 at 957.034 kb on - strand, within LU632_RS04895 at 957.036 kb on - strand, within LU632_RS04895 at 957.084 kb on + strand, within LU632_RS04895 at 957.084 kb on + strand, within LU632_RS04895 at 957.084 kb on + strand, within LU632_RS04895 at 957.234 kb on + strand, within LU632_RS04900 at 957.234 kb on + strand, within LU632_RS04900 at 957.236 kb on + strand, within LU632_RS04900 at 957.236 kb on + strand, within LU632_RS04900 at 957.237 kb on - strand, within LU632_RS04900 at 957.248 kb on + strand, within LU632_RS04900 at 957.402 kb on + strand, within LU632_RS04900 at 957.402 kb on + strand, within LU632_RS04900 at 957.402 kb on + strand, within LU632_RS04900 at 957.402 kb on + strand, within LU632_RS04900 at 957.403 kb on - strand, within LU632_RS04900 at 957.403 kb on - strand, within LU632_RS04900 at 957.403 kb on - strand, within LU632_RS04900 at 957.403 kb on - strand, within LU632_RS04900 at 957.419 kb on - strand, within LU632_RS04900 at 957.419 kb on - strand, within LU632_RS04900 at 957.419 kb on - strand, within LU632_RS04900 at 957.419 kb on - strand, within LU632_RS04900 at 957.419 kb on - strand, within LU632_RS04900 at 957.428 kb on + strand, within LU632_RS04900 at 957.428 kb on + strand, within LU632_RS04900 at 957.428 kb on + strand, within LU632_RS04900 at 957.460 kb on - strand, within LU632_RS04900 at 957.465 kb on - strand, within LU632_RS04900 at 957.744 kb on + strand at 957.767 kb on + strand at 957.768 kb on - strand at 957.768 kb on - strand at 957.777 kb on - strand at 957.781 kb on + strand at 957.782 kb on - strand at 957.782 kb on - strand at 957.808 kb on - strand, within LU632_RS04905 at 957.848 kb on + strand, within LU632_RS04905 at 957.905 kb on + strand, within LU632_RS04905
Per-strain Table
Position Strand Gene LocusTag Fraction MJM9 remove 955,995 - +0.0 956,108 + +0.2 956,108 + +0.8 956,207 - +0.0 956,219 - +0.4 956,219 - -0.2 956,265 + -0.7 956,319 + -0.5 956,378 + -0.4 956,379 - -0.9 956,383 + +0.7 956,390 - +0.2 956,424 + -0.3 956,446 + -0.3 956,494 + LU632_RS04890 0.18 +0.1 956,569 + LU632_RS04890 0.34 -1.0 956,569 + LU632_RS04890 0.34 +1.5 956,569 + LU632_RS04890 0.34 +0.4 956,570 - LU632_RS04890 0.34 -0.1 956,706 + LU632_RS04890 0.64 -0.4 956,759 + LU632_RS04890 0.75 +0.2 956,781 - LU632_RS04890 0.80 +2.3 956,797 + LU632_RS04890 0.83 +0.4 956,798 - LU632_RS04890 0.83 +0.4 956,798 - LU632_RS04890 0.83 +0.3 956,799 + LU632_RS04890 0.84 +0.1 956,799 + LU632_RS04890 0.84 -0.0 956,800 - LU632_RS04890 0.84 +0.1 956,839 - +0.8 956,936 - -0.6 956,939 - +0.0 957,033 + LU632_RS04895 0.40 +0.4 957,033 + LU632_RS04895 0.40 -0.7 957,034 - LU632_RS04895 0.40 +0.3 957,034 - LU632_RS04895 0.40 -0.2 957,034 - LU632_RS04895 0.40 -0.0 957,034 - LU632_RS04895 0.40 +0.2 957,036 - LU632_RS04895 0.41 -0.2 957,084 + LU632_RS04895 0.65 +0.2 957,084 + LU632_RS04895 0.65 -2.0 957,084 + LU632_RS04895 0.65 +0.5 957,234 + LU632_RS04900 0.11 +0.3 957,234 + LU632_RS04900 0.11 -0.7 957,236 + LU632_RS04900 0.12 +0.5 957,236 + LU632_RS04900 0.12 -1.0 957,237 - LU632_RS04900 0.12 +0.3 957,248 + LU632_RS04900 0.14 -1.0 957,402 + LU632_RS04900 0.40 +0.2 957,402 + LU632_RS04900 0.40 +0.4 957,402 + LU632_RS04900 0.40 -0.2 957,402 + LU632_RS04900 0.40 +0.2 957,403 - LU632_RS04900 0.40 +0.6 957,403 - LU632_RS04900 0.40 -0.4 957,403 - LU632_RS04900 0.40 -0.9 957,403 - LU632_RS04900 0.40 +1.1 957,419 - LU632_RS04900 0.43 +1.3 957,419 - LU632_RS04900 0.43 +0.2 957,419 - LU632_RS04900 0.43 +0.1 957,419 - LU632_RS04900 0.43 -0.4 957,419 - LU632_RS04900 0.43 -0.5 957,428 + LU632_RS04900 0.44 +0.1 957,428 + LU632_RS04900 0.44 -0.6 957,428 + LU632_RS04900 0.44 +0.3 957,460 - LU632_RS04900 0.49 +0.2 957,465 - LU632_RS04900 0.50 -0.3 957,744 + +0.0 957,767 + +0.4 957,768 - +2.0 957,768 - -0.1 957,777 - +1.0 957,781 + -0.5 957,782 - +0.2 957,782 - -1.2 957,808 - LU632_RS04905 0.16 +0.4 957,848 + LU632_RS04905 0.32 +1.0 957,905 + LU632_RS04905 0.57 -0.7
Or see this region's nucleotide sequence