Experiment: MJM9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04705 and LU632_RS04710 are separated by 416 nucleotides LU632_RS04710 and LU632_RS04715 are separated by 350 nucleotides
LU632_RS04705: LU632_RS04705 - helix-turn-helix domain-containing protein, at 921,920 to 922,945
_RS04705
LU632_RS04710: LU632_RS04710 - IS110 family transposase, at 923,362 to 924,359
_RS04710
LU632_RS04715: LU632_RS04715 - IS5 family transposase, at 924,710 to 925,477
_RS04715
Position (kb) 923
924
925 Strain fitness (log2 ratio) -2
-1
0
1 at 923.083 kb on + strand at 923.084 kb on - strand at 923.085 kb on + strand at 923.086 kb on - strand at 923.087 kb on + strand at 923.088 kb on - strand at 923.088 kb on - strand at 923.088 kb on - strand at 923.088 kb on - strand at 923.088 kb on - strand at 923.117 kb on - strand at 923.907 kb on - strand, within LU632_RS04710 at 924.491 kb on - strand at 924.491 kb on - strand at 924.491 kb on - strand at 924.516 kb on - strand at 924.516 kb on - strand at 924.568 kb on + strand at 924.569 kb on - strand at 924.590 kb on + strand at 924.591 kb on - strand at 924.591 kb on - strand at 924.597 kb on + strand at 924.598 kb on - strand at 924.599 kb on + strand at 924.600 kb on - strand at 924.601 kb on + strand at 924.602 kb on - strand at 924.629 kb on + strand at 924.630 kb on - strand at 924.665 kb on + strand at 924.666 kb on - strand at 924.666 kb on - strand at 924.672 kb on + strand at 924.673 kb on - strand at 924.674 kb on + strand at 924.674 kb on + strand at 924.675 kb on - strand at 924.675 kb on - strand at 924.689 kb on + strand at 924.708 kb on + strand at 924.728 kb on + strand at 924.752 kb on - strand at 924.854 kb on - strand, within LU632_RS04715 at 924.854 kb on - strand, within LU632_RS04715 at 924.958 kb on + strand, within LU632_RS04715 at 924.959 kb on - strand, within LU632_RS04715 at 924.963 kb on - strand, within LU632_RS04715 at 925.119 kb on + strand, within LU632_RS04715 at 925.119 kb on - strand, within LU632_RS04715 at 925.120 kb on - strand, within LU632_RS04715 at 925.142 kb on - strand, within LU632_RS04715 at 925.338 kb on - strand, within LU632_RS04715
Per-strain Table
Position Strand Gene LocusTag Fraction MJM9 remove 923,083 + -0.1 923,084 - +1.1 923,085 + +0.1 923,086 - -0.3 923,087 + -0.4 923,088 - +0.5 923,088 - +0.2 923,088 - +1.0 923,088 - -0.0 923,088 - -0.0 923,117 - -0.0 923,907 - LU632_RS04710 0.55 -0.6 924,491 - -2.0 924,491 - -0.4 924,491 - -0.0 924,516 - +0.1 924,516 - -0.1 924,568 + +0.0 924,569 - +0.3 924,590 + -0.6 924,591 - +0.6 924,591 - -0.2 924,597 + +0.1 924,598 - -1.8 924,599 + -1.0 924,600 - -0.6 924,601 + -0.3 924,602 - -0.5 924,629 + -0.3 924,630 - +0.1 924,665 + -0.9 924,666 - -0.8 924,666 - -0.4 924,672 + +0.5 924,673 - +0.0 924,674 + +0.7 924,674 + -0.5 924,675 - -0.3 924,675 - -0.2 924,689 + +0.2 924,708 + +0.1 924,728 + -0.1 924,752 - -0.8 924,854 - LU632_RS04715 0.19 +0.2 924,854 - LU632_RS04715 0.19 +0.2 924,958 + LU632_RS04715 0.32 -0.6 924,959 - LU632_RS04715 0.32 -0.4 924,963 - LU632_RS04715 0.33 -0.1 925,119 + LU632_RS04715 0.53 +0.2 925,119 - LU632_RS04715 0.53 -0.3 925,120 - LU632_RS04715 0.53 -0.4 925,142 - LU632_RS04715 0.56 +0.0 925,338 - LU632_RS04715 0.82 -0.9
Or see this region's nucleotide sequence