Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS04680

Experiment: MJM9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS04670 and LU632_RS04675 overlap by 4 nucleotidesLU632_RS04675 and LU632_RS04680 are separated by 248 nucleotidesLU632_RS04680 and LU632_RS04685 are separated by 34 nucleotidesLU632_RS04685 and LU632_RS04690 are separated by 6 nucleotides LU632_RS04670: LU632_RS04670 - conjugative transfer ATPase, at 914,918 to 916,131 _RS04670 LU632_RS04675: LU632_RS04675 - hypothetical protein, at 916,128 to 916,532 _RS04675 LU632_RS04680: LU632_RS04680 - IS481 family transposase, at 916,781 to 917,689 _RS04680 LU632_RS04685: LU632_RS04685 - universal stress protein, at 917,724 to 918,089 _RS04685 LU632_RS04690: LU632_RS04690 - IclR family transcriptional regulator, at 918,096 to 918,878 _RS04690 Position (kb) 916 917 918Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 916.721 kb on + strandat 916.722 kb on - strandat 917.744 kb on + strandat 917.811 kb on + strand, within LU632_RS04685at 917.811 kb on + strand, within LU632_RS04685at 917.938 kb on - strand, within LU632_RS04685at 917.938 kb on - strand, within LU632_RS04685at 917.985 kb on + strand, within LU632_RS04685at 917.985 kb on + strand, within LU632_RS04685at 917.985 kb on + strand, within LU632_RS04685at 917.985 kb on + strand, within LU632_RS04685at 917.986 kb on - strand, within LU632_RS04685at 917.986 kb on - strand, within LU632_RS04685at 917.992 kb on - strand, within LU632_RS04685at 918.120 kb on + strandat 918.207 kb on + strand, within LU632_RS04690at 918.231 kb on + strand, within LU632_RS04690at 918.353 kb on + strand, within LU632_RS04690at 918.354 kb on - strand, within LU632_RS04690at 918.508 kb on + strand, within LU632_RS04690at 918.508 kb on + strand, within LU632_RS04690at 918.508 kb on + strand, within LU632_RS04690at 918.508 kb on + strand, within LU632_RS04690at 918.509 kb on - strand, within LU632_RS04690at 918.509 kb on - strand, within LU632_RS04690at 918.640 kb on - strand, within LU632_RS04690

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Per-strain Table

Position Strand Gene LocusTag Fraction MJM9
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916,721 + -0.0
916,722 - -0.8
917,744 + +0.6
917,811 + LU632_RS04685 0.24 -1.5
917,811 + LU632_RS04685 0.24 -0.9
917,938 - LU632_RS04685 0.58 +1.5
917,938 - LU632_RS04685 0.58 -1.2
917,985 + LU632_RS04685 0.71 +0.2
917,985 + LU632_RS04685 0.71 +0.5
917,985 + LU632_RS04685 0.71 -0.6
917,985 + LU632_RS04685 0.71 -0.4
917,986 - LU632_RS04685 0.72 -0.4
917,986 - LU632_RS04685 0.72 +0.6
917,992 - LU632_RS04685 0.73 +0.2
918,120 + -0.6
918,207 + LU632_RS04690 0.14 -0.8
918,231 + LU632_RS04690 0.17 +0.4
918,353 + LU632_RS04690 0.33 -1.0
918,354 - LU632_RS04690 0.33 -0.7
918,508 + LU632_RS04690 0.53 -0.4
918,508 + LU632_RS04690 0.53 -0.0
918,508 + LU632_RS04690 0.53 -3.2
918,508 + LU632_RS04690 0.53 +3.0
918,509 - LU632_RS04690 0.53 -0.6
918,509 - LU632_RS04690 0.53 -0.5
918,640 - LU632_RS04690 0.69 +0.2

Or see this region's nucleotide sequence