Experiment: MJM9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04560 and LU632_RS04565 are separated by 73 nucleotides LU632_RS04565 and LU632_RS04570 overlap by 61 nucleotides LU632_RS04570 and LU632_RS04575 are separated by 147 nucleotides
LU632_RS04560: LU632_RS04560 - Rpn family recombination-promoting nuclease/putative transposase, at 894,128 to 895,066
_RS04560
LU632_RS04565: LU632_RS04565 - restriction endonuclease, at 895,140 to 895,556
_RS04565
LU632_RS04570: LU632_RS04570 - hypothetical protein, at 895,496 to 895,918
_RS04570
LU632_RS04575: LU632_RS04575 - IS91 family transposase, at 896,066 to 897,289
_RS04575
Position (kb) 895
896 Strain fitness (log2 ratio) -1
0
1 at 894.497 kb on - strand, within LU632_RS04560 at 894.587 kb on - strand, within LU632_RS04560 at 894.594 kb on + strand, within LU632_RS04560 at 894.595 kb on - strand, within LU632_RS04560 at 894.675 kb on + strand, within LU632_RS04560 at 894.676 kb on - strand, within LU632_RS04560 at 894.676 kb on - strand, within LU632_RS04560 at 894.690 kb on - strand, within LU632_RS04560 at 894.692 kb on + strand, within LU632_RS04560 at 894.807 kb on - strand, within LU632_RS04560 at 894.814 kb on + strand, within LU632_RS04560 at 894.814 kb on + strand, within LU632_RS04560 at 894.814 kb on + strand, within LU632_RS04560 at 894.814 kb on + strand, within LU632_RS04560 at 894.814 kb on + strand, within LU632_RS04560 at 894.815 kb on - strand, within LU632_RS04560 at 894.815 kb on - strand, within LU632_RS04560 at 894.816 kb on + strand, within LU632_RS04560 at 894.816 kb on + strand, within LU632_RS04560 at 894.816 kb on + strand, within LU632_RS04560 at 894.850 kb on - strand, within LU632_RS04560 at 895.088 kb on + strand at 895.089 kb on - strand at 895.123 kb on - strand at 895.141 kb on + strand at 895.180 kb on + strand at 895.182 kb on + strand, within LU632_RS04565 at 895.328 kb on + strand, within LU632_RS04565 at 895.450 kb on + strand, within LU632_RS04565 at 895.450 kb on + strand, within LU632_RS04565 at 895.450 kb on + strand, within LU632_RS04565 at 895.461 kb on - strand, within LU632_RS04565 at 895.461 kb on - strand, within LU632_RS04565 at 895.627 kb on + strand, within LU632_RS04570 at 895.627 kb on + strand, within LU632_RS04570 at 895.632 kb on - strand, within LU632_RS04570 at 895.632 kb on - strand, within LU632_RS04570 at 895.716 kb on + strand, within LU632_RS04570 at 895.716 kb on + strand, within LU632_RS04570 at 895.716 kb on + strand, within LU632_RS04570
Per-strain Table
Position Strand Gene LocusTag Fraction MJM9 remove 894,497 - LU632_RS04560 0.39 -0.1 894,587 - LU632_RS04560 0.49 -0.4 894,594 + LU632_RS04560 0.50 -0.1 894,595 - LU632_RS04560 0.50 -0.1 894,675 + LU632_RS04560 0.58 -0.4 894,676 - LU632_RS04560 0.58 +0.3 894,676 - LU632_RS04560 0.58 +0.2 894,690 - LU632_RS04560 0.60 +0.1 894,692 + LU632_RS04560 0.60 +0.0 894,807 - LU632_RS04560 0.72 -0.2 894,814 + LU632_RS04560 0.73 +0.8 894,814 + LU632_RS04560 0.73 +0.0 894,814 + LU632_RS04560 0.73 +0.5 894,814 + LU632_RS04560 0.73 -0.4 894,814 + LU632_RS04560 0.73 +0.2 894,815 - LU632_RS04560 0.73 +0.9 894,815 - LU632_RS04560 0.73 +0.1 894,816 + LU632_RS04560 0.73 +0.0 894,816 + LU632_RS04560 0.73 -0.6 894,816 + LU632_RS04560 0.73 -0.4 894,850 - LU632_RS04560 0.77 -0.0 895,088 + +1.5 895,089 - +0.4 895,123 - -0.9 895,141 + +0.7 895,180 + -0.0 895,182 + LU632_RS04565 0.10 +0.1 895,328 + LU632_RS04565 0.45 -0.5 895,450 + LU632_RS04565 0.74 -1.6 895,450 + LU632_RS04565 0.74 +1.0 895,450 + LU632_RS04565 0.74 +1.5 895,461 - LU632_RS04565 0.77 -1.1 895,461 - LU632_RS04565 0.77 -0.2 895,627 + LU632_RS04570 0.31 -0.4 895,627 + LU632_RS04570 0.31 +0.5 895,632 - LU632_RS04570 0.32 -0.1 895,632 - LU632_RS04570 0.32 +0.1 895,716 + LU632_RS04570 0.52 -0.5 895,716 + LU632_RS04570 0.52 -0.5 895,716 + LU632_RS04570 0.52 +1.2
Or see this region's nucleotide sequence