Experiment: MJM9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04155 and LU632_RS04160 are separated by 217 nucleotides LU632_RS04160 and LU632_RS04165 are separated by 345 nucleotides
LU632_RS04155: LU632_RS04155 - polysaccharide lyase family protein, at 823,836 to 825,554
_RS04155
LU632_RS04160: LU632_RS04160 - KdgM family transporter, at 825,772 to 826,515
_RS04160
LU632_RS04165: LU632_RS04165 - 2-isopropylmalate synthase, at 826,861 to 827,376
_RS04165
Position (kb) 825
826
827 Strain fitness (log2 ratio) -1
0
1
2 at 824.872 kb on + strand, within LU632_RS04155 at 824.940 kb on + strand, within LU632_RS04155 at 824.960 kb on + strand, within LU632_RS04155 at 825.137 kb on + strand, within LU632_RS04155 at 825.137 kb on + strand, within LU632_RS04155 at 825.141 kb on + strand, within LU632_RS04155 at 825.217 kb on - strand, within LU632_RS04155 at 825.361 kb on + strand, within LU632_RS04155 at 825.453 kb on - strand at 825.453 kb on - strand at 825.492 kb on - strand at 825.528 kb on + strand at 825.529 kb on - strand at 825.529 kb on - strand at 825.536 kb on + strand at 825.537 kb on - strand at 825.540 kb on - strand at 825.663 kb on + strand at 825.722 kb on - strand at 825.969 kb on + strand, within LU632_RS04160 at 826.011 kb on + strand, within LU632_RS04160 at 826.012 kb on - strand, within LU632_RS04160 at 826.023 kb on - strand, within LU632_RS04160 at 826.105 kb on - strand, within LU632_RS04160 at 826.147 kb on + strand, within LU632_RS04160 at 826.158 kb on + strand, within LU632_RS04160 at 826.365 kb on + strand, within LU632_RS04160 at 826.366 kb on - strand, within LU632_RS04160 at 826.370 kb on - strand, within LU632_RS04160 at 826.383 kb on - strand, within LU632_RS04160 at 826.427 kb on - strand, within LU632_RS04160 at 826.443 kb on + strand at 826.446 kb on + strand at 826.618 kb on + strand at 826.719 kb on - strand at 826.754 kb on + strand at 826.754 kb on + strand at 826.801 kb on + strand at 826.852 kb on + strand at 826.888 kb on - strand at 826.888 kb on - strand at 826.999 kb on - strand, within LU632_RS04165 at 827.054 kb on + strand, within LU632_RS04165 at 827.058 kb on + strand, within LU632_RS04165 at 827.097 kb on + strand, within LU632_RS04165 at 827.236 kb on + strand, within LU632_RS04165 at 827.236 kb on + strand, within LU632_RS04165 at 827.256 kb on + strand, within LU632_RS04165 at 827.256 kb on + strand, within LU632_RS04165 at 827.257 kb on - strand, within LU632_RS04165 at 827.335 kb on - strand at 827.336 kb on + strand at 827.338 kb on + strand at 827.338 kb on + strand at 827.338 kb on + strand at 827.338 kb on + strand at 827.339 kb on - strand at 827.404 kb on + strand at 827.426 kb on + strand at 827.426 kb on + strand at 827.431 kb on + strand at 827.432 kb on - strand at 827.466 kb on + strand at 827.503 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MJM9 remove 824,872 + LU632_RS04155 0.60 +0.4 824,940 + LU632_RS04155 0.64 -0.1 824,960 + LU632_RS04155 0.65 -0.2 825,137 + LU632_RS04155 0.76 +0.9 825,137 + LU632_RS04155 0.76 +0.3 825,141 + LU632_RS04155 0.76 +0.9 825,217 - LU632_RS04155 0.80 +0.3 825,361 + LU632_RS04155 0.89 +0.2 825,453 - +0.2 825,453 - -0.1 825,492 - +0.3 825,528 + +0.3 825,529 - -1.0 825,529 - -0.1 825,536 + -0.3 825,537 - +0.2 825,540 - -1.4 825,663 + +0.7 825,722 - -0.1 825,969 + LU632_RS04160 0.26 +0.1 826,011 + LU632_RS04160 0.32 -1.1 826,012 - LU632_RS04160 0.32 -1.7 826,023 - LU632_RS04160 0.34 +0.7 826,105 - LU632_RS04160 0.45 +0.1 826,147 + LU632_RS04160 0.50 +0.1 826,158 + LU632_RS04160 0.52 +0.6 826,365 + LU632_RS04160 0.80 -0.3 826,366 - LU632_RS04160 0.80 +0.2 826,370 - LU632_RS04160 0.80 +0.2 826,383 - LU632_RS04160 0.82 +0.7 826,427 - LU632_RS04160 0.88 +1.9 826,443 + -0.5 826,446 + -0.3 826,618 + +0.0 826,719 - -1.2 826,754 + -0.3 826,754 + -1.4 826,801 + +0.3 826,852 + -0.1 826,888 - -0.8 826,888 - -0.4 826,999 - LU632_RS04165 0.27 +0.2 827,054 + LU632_RS04165 0.37 -0.1 827,058 + LU632_RS04165 0.38 +1.2 827,097 + LU632_RS04165 0.46 +0.2 827,236 + LU632_RS04165 0.73 -0.1 827,236 + LU632_RS04165 0.73 +0.1 827,256 + LU632_RS04165 0.77 +0.4 827,256 + LU632_RS04165 0.77 -0.1 827,257 - LU632_RS04165 0.77 -0.6 827,335 - -0.6 827,336 + +1.5 827,338 + +0.2 827,338 + +0.6 827,338 + +1.4 827,338 + -0.5 827,339 - +0.4 827,404 + +0.6 827,426 + -0.5 827,426 + +0.1 827,431 + -0.3 827,432 - -0.5 827,466 + -0.4 827,503 - +1.7
Or see this region's nucleotide sequence