Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS04155

Experiment: MJM9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntistB and LU632_RS04155 are separated by 554 nucleotidesLU632_RS04155 and LU632_RS04160 are separated by 217 nucleotides LU632_RS04150: istB - IS21-like element helper ATPase IstB, at 822,538 to 823,281 istB LU632_RS04155: LU632_RS04155 - polysaccharide lyase family protein, at 823,836 to 825,554 _RS04155 LU632_RS04160: LU632_RS04160 - KdgM family transporter, at 825,772 to 826,515 _RS04160 Position (kb) 823 824 825 826Strain fitness (log2 ratio) -2 -1 0 1 2at 822.988 kb on + strand, within istBat 823.392 kb on - strandat 823.550 kb on + strandat 823.551 kb on - strandat 823.890 kb on + strandat 823.898 kb on + strandat 823.994 kb on + strandat 823.994 kb on + strandat 823.995 kb on - strandat 824.016 kb on - strand, within LU632_RS04155at 824.157 kb on - strand, within LU632_RS04155at 824.168 kb on + strand, within LU632_RS04155at 824.210 kb on + strand, within LU632_RS04155at 824.211 kb on - strand, within LU632_RS04155at 824.236 kb on - strand, within LU632_RS04155at 824.238 kb on - strand, within LU632_RS04155at 824.238 kb on - strand, within LU632_RS04155at 824.238 kb on - strand, within LU632_RS04155at 824.238 kb on - strand, within LU632_RS04155at 824.238 kb on - strand, within LU632_RS04155at 824.242 kb on - strand, within LU632_RS04155at 824.331 kb on - strand, within LU632_RS04155at 824.361 kb on + strand, within LU632_RS04155at 824.361 kb on + strand, within LU632_RS04155at 824.368 kb on - strand, within LU632_RS04155at 824.385 kb on - strand, within LU632_RS04155at 824.507 kb on - strand, within LU632_RS04155at 824.515 kb on + strand, within LU632_RS04155at 824.515 kb on + strand, within LU632_RS04155at 824.515 kb on + strand, within LU632_RS04155at 824.516 kb on - strand, within LU632_RS04155at 824.546 kb on + strand, within LU632_RS04155at 824.551 kb on + strand, within LU632_RS04155at 824.551 kb on + strand, within LU632_RS04155at 824.586 kb on - strand, within LU632_RS04155at 824.615 kb on - strand, within LU632_RS04155at 824.615 kb on - strand, within LU632_RS04155at 824.677 kb on - strand, within LU632_RS04155at 824.872 kb on + strand, within LU632_RS04155at 824.940 kb on + strand, within LU632_RS04155at 824.960 kb on + strand, within LU632_RS04155at 825.137 kb on + strand, within LU632_RS04155at 825.137 kb on + strand, within LU632_RS04155at 825.141 kb on + strand, within LU632_RS04155at 825.217 kb on - strand, within LU632_RS04155at 825.361 kb on + strand, within LU632_RS04155at 825.453 kb on - strandat 825.453 kb on - strandat 825.492 kb on - strandat 825.528 kb on + strandat 825.529 kb on - strandat 825.529 kb on - strandat 825.536 kb on + strandat 825.537 kb on - strandat 825.540 kb on - strandat 825.663 kb on + strandat 825.722 kb on - strandat 825.969 kb on + strand, within LU632_RS04160at 826.011 kb on + strand, within LU632_RS04160at 826.012 kb on - strand, within LU632_RS04160at 826.023 kb on - strand, within LU632_RS04160at 826.105 kb on - strand, within LU632_RS04160at 826.147 kb on + strand, within LU632_RS04160at 826.158 kb on + strand, within LU632_RS04160at 826.365 kb on + strand, within LU632_RS04160at 826.366 kb on - strand, within LU632_RS04160at 826.370 kb on - strand, within LU632_RS04160at 826.383 kb on - strand, within LU632_RS04160at 826.427 kb on - strand, within LU632_RS04160at 826.443 kb on + strandat 826.446 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MJM9
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822,988 + istB LU632_RS04150 0.60 +0.9
823,392 - -0.7
823,550 + -0.3
823,551 - +0.3
823,890 + -0.1
823,898 + +0.6
823,994 + +0.0
823,994 + +0.6
823,995 - -0.1
824,016 - LU632_RS04155 0.10 -0.6
824,157 - LU632_RS04155 0.19 +1.2
824,168 + LU632_RS04155 0.19 +0.1
824,210 + LU632_RS04155 0.22 -0.3
824,211 - LU632_RS04155 0.22 -0.1
824,236 - LU632_RS04155 0.23 -0.1
824,238 - LU632_RS04155 0.23 +1.4
824,238 - LU632_RS04155 0.23 +0.4
824,238 - LU632_RS04155 0.23 -0.3
824,238 - LU632_RS04155 0.23 -0.3
824,238 - LU632_RS04155 0.23 +0.1
824,242 - LU632_RS04155 0.24 +1.4
824,331 - LU632_RS04155 0.29 -0.4
824,361 + LU632_RS04155 0.31 -0.6
824,361 + LU632_RS04155 0.31 -0.3
824,368 - LU632_RS04155 0.31 +0.3
824,385 - LU632_RS04155 0.32 -0.4
824,507 - LU632_RS04155 0.39 +1.1
824,515 + LU632_RS04155 0.39 +0.9
824,515 + LU632_RS04155 0.39 -0.6
824,515 + LU632_RS04155 0.39 +0.0
824,516 - LU632_RS04155 0.40 +0.1
824,546 + LU632_RS04155 0.41 -0.2
824,551 + LU632_RS04155 0.42 -2.0
824,551 + LU632_RS04155 0.42 +0.2
824,586 - LU632_RS04155 0.44 +1.5
824,615 - LU632_RS04155 0.45 +0.3
824,615 - LU632_RS04155 0.45 +0.0
824,677 - LU632_RS04155 0.49 +0.1
824,872 + LU632_RS04155 0.60 +0.4
824,940 + LU632_RS04155 0.64 -0.1
824,960 + LU632_RS04155 0.65 -0.2
825,137 + LU632_RS04155 0.76 +0.9
825,137 + LU632_RS04155 0.76 +0.3
825,141 + LU632_RS04155 0.76 +0.9
825,217 - LU632_RS04155 0.80 +0.3
825,361 + LU632_RS04155 0.89 +0.2
825,453 - +0.2
825,453 - -0.1
825,492 - +0.3
825,528 + +0.3
825,529 - -1.0
825,529 - -0.1
825,536 + -0.3
825,537 - +0.2
825,540 - -1.4
825,663 + +0.7
825,722 - -0.1
825,969 + LU632_RS04160 0.26 +0.1
826,011 + LU632_RS04160 0.32 -1.1
826,012 - LU632_RS04160 0.32 -1.7
826,023 - LU632_RS04160 0.34 +0.7
826,105 - LU632_RS04160 0.45 +0.1
826,147 + LU632_RS04160 0.50 +0.1
826,158 + LU632_RS04160 0.52 +0.6
826,365 + LU632_RS04160 0.80 -0.3
826,366 - LU632_RS04160 0.80 +0.2
826,370 - LU632_RS04160 0.80 +0.2
826,383 - LU632_RS04160 0.82 +0.7
826,427 - LU632_RS04160 0.88 +1.9
826,443 + -0.5
826,446 + -0.3

Or see this region's nucleotide sequence