Experiment: MJM9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS01235 and LU632_RS01240 are separated by 65 nucleotides LU632_RS01240 and LU632_RS01245 are separated by 50 nucleotides LU632_RS01245 and dcuR overlap by 23 nucleotides dcuR and LU632_RS01255 overlap by 4 nucleotides
LU632_RS01235: LU632_RS01235 - FAD-binding protein, at 260,064 to 260,627
_RS01235
LU632_RS01240: LU632_RS01240 - FAD-binding protein, at 260,693 to 261,061
_RS01240
LU632_RS01245: LU632_RS01245 - FAD:protein FMN transferase, at 261,112 to 262,080
_RS01245
LU632_RS01250: dcuR - two-component system response regulator DcuR, at 262,058 to 262,781
dcuR
LU632_RS01255: LU632_RS01255 - ATP-binding protein, at 262,778 to 263,086
_RS01255
LU632_RS01260: LU632_RS01260 - MurR/RpiR family transcriptional regulator, at 263,052 to 263,912
_RS01260
Position (kb) 261
262
263 Strain fitness (log2 ratio) -1
0
1
2 at 260.142 kb on + strand, within LU632_RS01235 at 260.143 kb on - strand, within LU632_RS01235 at 260.184 kb on - strand, within LU632_RS01235 at 260.241 kb on + strand, within LU632_RS01235 at 260.241 kb on + strand, within LU632_RS01235 at 260.278 kb on + strand, within LU632_RS01235 at 260.282 kb on + strand, within LU632_RS01235 at 260.282 kb on + strand, within LU632_RS01235 at 260.282 kb on + strand, within LU632_RS01235 at 260.282 kb on + strand, within LU632_RS01235 at 260.282 kb on + strand, within LU632_RS01235 at 260.283 kb on - strand, within LU632_RS01235 at 260.283 kb on - strand, within LU632_RS01235 at 260.344 kb on + strand, within LU632_RS01235 at 260.375 kb on + strand, within LU632_RS01235 at 260.376 kb on - strand, within LU632_RS01235 at 260.378 kb on + strand, within LU632_RS01235 at 260.379 kb on - strand, within LU632_RS01235 at 260.379 kb on - strand, within LU632_RS01235 at 260.416 kb on + strand, within LU632_RS01235 at 260.416 kb on + strand, within LU632_RS01235 at 260.675 kb on + strand at 260.675 kb on + strand at 260.675 kb on + strand at 260.676 kb on - strand at 260.677 kb on + strand at 260.678 kb on - strand at 260.678 kb on - strand at 260.763 kb on - strand, within LU632_RS01240 at 260.763 kb on - strand, within LU632_RS01240 at 260.763 kb on - strand, within LU632_RS01240 at 260.858 kb on - strand, within LU632_RS01240 at 260.949 kb on + strand, within LU632_RS01240 at 260.990 kb on - strand, within LU632_RS01240 at 261.005 kb on - strand, within LU632_RS01240 at 261.005 kb on - strand, within LU632_RS01240 at 261.008 kb on - strand, within LU632_RS01240 at 261.129 kb on + strand at 261.129 kb on + strand at 261.129 kb on + strand at 261.130 kb on - strand at 261.133 kb on + strand at 261.133 kb on + strand at 261.133 kb on + strand at 261.134 kb on - strand at 261.139 kb on + strand at 261.140 kb on - strand at 261.140 kb on - strand at 261.140 kb on - strand at 261.272 kb on + strand, within LU632_RS01245 at 261.340 kb on - strand, within LU632_RS01245 at 261.576 kb on + strand, within LU632_RS01245 at 261.602 kb on + strand, within LU632_RS01245 at 261.603 kb on - strand, within LU632_RS01245 at 261.732 kb on + strand, within LU632_RS01245 at 261.773 kb on - strand, within LU632_RS01245 at 261.813 kb on + strand, within LU632_RS01245 at 261.871 kb on - strand, within LU632_RS01245 at 261.871 kb on - strand, within LU632_RS01245 at 261.978 kb on - strand, within LU632_RS01245 at 262.071 kb on + strand at 262.071 kb on + strand at 262.286 kb on - strand, within dcuR at 262.336 kb on + strand, within dcuR at 262.384 kb on - strand, within dcuR at 262.384 kb on - strand, within dcuR at 262.387 kb on - strand, within dcuR at 262.387 kb on - strand, within dcuR at 262.387 kb on - strand, within dcuR at 262.387 kb on - strand, within dcuR at 262.489 kb on + strand, within dcuR at 262.490 kb on - strand, within dcuR at 262.542 kb on + strand, within dcuR at 262.542 kb on + strand, within dcuR at 262.542 kb on + strand, within dcuR at 262.609 kb on + strand, within dcuR at 262.610 kb on - strand, within dcuR at 262.626 kb on + strand, within dcuR at 262.626 kb on + strand, within dcuR at 262.627 kb on - strand, within dcuR at 262.692 kb on - strand, within dcuR at 262.764 kb on + strand at 262.764 kb on + strand at 262.764 kb on + strand at 262.764 kb on + strand at 262.765 kb on - strand at 262.767 kb on + strand at 262.776 kb on + strand at 262.777 kb on - strand at 262.777 kb on - strand at 262.814 kb on + strand, within LU632_RS01255 at 262.815 kb on - strand, within LU632_RS01255 at 262.957 kb on + strand, within LU632_RS01255 at 262.957 kb on + strand, within LU632_RS01255 at 262.958 kb on - strand, within LU632_RS01255 at 262.958 kb on - strand, within LU632_RS01255 at 263.080 kb on + strand at 263.080 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MJM9 remove 260,142 + LU632_RS01235 0.14 -0.3 260,143 - LU632_RS01235 0.14 -0.6 260,184 - LU632_RS01235 0.21 +0.5 260,241 + LU632_RS01235 0.31 +1.2 260,241 + LU632_RS01235 0.31 +0.6 260,278 + LU632_RS01235 0.38 -0.6 260,282 + LU632_RS01235 0.39 -0.2 260,282 + LU632_RS01235 0.39 +0.0 260,282 + LU632_RS01235 0.39 +0.9 260,282 + LU632_RS01235 0.39 +0.4 260,282 + LU632_RS01235 0.39 +0.5 260,283 - LU632_RS01235 0.39 +0.1 260,283 - LU632_RS01235 0.39 -0.1 260,344 + LU632_RS01235 0.50 +0.2 260,375 + LU632_RS01235 0.55 +0.3 260,376 - LU632_RS01235 0.55 +0.1 260,378 + LU632_RS01235 0.56 +0.3 260,379 - LU632_RS01235 0.56 -0.1 260,379 - LU632_RS01235 0.56 -1.7 260,416 + LU632_RS01235 0.62 +2.4 260,416 + LU632_RS01235 0.62 -0.6 260,675 + -0.1 260,675 + -0.8 260,675 + -0.5 260,676 - +1.5 260,677 + +0.9 260,678 - -0.5 260,678 - -0.0 260,763 - LU632_RS01240 0.19 +0.4 260,763 - LU632_RS01240 0.19 -0.2 260,763 - LU632_RS01240 0.19 +0.9 260,858 - LU632_RS01240 0.45 +0.5 260,949 + LU632_RS01240 0.69 +0.7 260,990 - LU632_RS01240 0.80 +1.9 261,005 - LU632_RS01240 0.85 -0.0 261,005 - LU632_RS01240 0.85 +0.2 261,008 - LU632_RS01240 0.85 +0.9 261,129 + -0.3 261,129 + +0.4 261,129 + -0.1 261,130 - -0.2 261,133 + +0.2 261,133 + -0.1 261,133 + -0.3 261,134 - -0.1 261,139 + +0.6 261,140 - +0.3 261,140 - -0.2 261,140 - -1.0 261,272 + LU632_RS01245 0.17 -0.4 261,340 - LU632_RS01245 0.24 -1.1 261,576 + LU632_RS01245 0.48 +0.5 261,602 + LU632_RS01245 0.51 -0.3 261,603 - LU632_RS01245 0.51 +0.5 261,732 + LU632_RS01245 0.64 +0.9 261,773 - LU632_RS01245 0.68 -0.2 261,813 + LU632_RS01245 0.72 +1.7 261,871 - LU632_RS01245 0.78 +0.7 261,871 - LU632_RS01245 0.78 +0.1 261,978 - LU632_RS01245 0.89 +1.6 262,071 + +0.2 262,071 + -0.7 262,286 - dcuR LU632_RS01250 0.31 -0.9 262,336 + dcuR LU632_RS01250 0.38 +0.3 262,384 - dcuR LU632_RS01250 0.45 +0.3 262,384 - dcuR LU632_RS01250 0.45 +0.3 262,387 - dcuR LU632_RS01250 0.45 +1.3 262,387 - dcuR LU632_RS01250 0.45 -0.2 262,387 - dcuR LU632_RS01250 0.45 -0.1 262,387 - dcuR LU632_RS01250 0.45 -0.9 262,489 + dcuR LU632_RS01250 0.60 +0.2 262,490 - dcuR LU632_RS01250 0.60 -1.0 262,542 + dcuR LU632_RS01250 0.67 +0.1 262,542 + dcuR LU632_RS01250 0.67 -1.1 262,542 + dcuR LU632_RS01250 0.67 -0.5 262,609 + dcuR LU632_RS01250 0.76 -0.5 262,610 - dcuR LU632_RS01250 0.76 -0.9 262,626 + dcuR LU632_RS01250 0.78 -1.5 262,626 + dcuR LU632_RS01250 0.78 +0.8 262,627 - dcuR LU632_RS01250 0.79 +0.3 262,692 - dcuR LU632_RS01250 0.88 -0.4 262,764 + +0.5 262,764 + -0.4 262,764 + +0.1 262,764 + -0.5 262,765 - +0.9 262,767 + +1.2 262,776 + +0.6 262,777 - -0.4 262,777 - -0.3 262,814 + LU632_RS01255 0.12 -0.1 262,815 - LU632_RS01255 0.12 -0.2 262,957 + LU632_RS01255 0.58 -0.7 262,957 + LU632_RS01255 0.58 +0.1 262,958 - LU632_RS01255 0.58 -0.0 262,958 - LU632_RS01255 0.58 +0.3 263,080 + -0.5 263,080 + +0.1
Or see this region's nucleotide sequence