Experiment: MJM9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS01225 and LU632_RS01230 are separated by 56 nucleotides LU632_RS01230 and LU632_RS01235 are separated by 18 nucleotides LU632_RS01235 and LU632_RS01240 are separated by 65 nucleotides LU632_RS01240 and LU632_RS01245 are separated by 50 nucleotides
LU632_RS01225: LU632_RS01225 - hypothetical protein, at 259,120 to 259,800
_RS01225
LU632_RS01230: LU632_RS01230 - hypothetical protein, at 259,857 to 260,045
_RS01230
LU632_RS01235: LU632_RS01235 - FAD-binding protein, at 260,064 to 260,627
_RS01235
LU632_RS01240: LU632_RS01240 - FAD-binding protein, at 260,693 to 261,061
_RS01240
LU632_RS01245: LU632_RS01245 - FAD:protein FMN transferase, at 261,112 to 262,080
_RS01245
LU632_RS01250: dcuR - two-component system response regulator DcuR, at 262,058 to 262,781
dcuR
Position (kb) 260
261
262 Strain fitness (log2 ratio) -1
0
1
2 at 259.714 kb on + strand, within LU632_RS01225 at 259.714 kb on + strand, within LU632_RS01225 at 259.714 kb on + strand, within LU632_RS01225 at 259.714 kb on + strand, within LU632_RS01225 at 259.715 kb on - strand, within LU632_RS01225 at 259.715 kb on - strand, within LU632_RS01225 at 259.715 kb on - strand, within LU632_RS01225 at 259.715 kb on - strand, within LU632_RS01225 at 259.715 kb on - strand, within LU632_RS01225 at 259.715 kb on - strand, within LU632_RS01225 at 259.715 kb on - strand, within LU632_RS01225 at 259.734 kb on + strand at 259.877 kb on + strand, within LU632_RS01230 at 259.878 kb on - strand, within LU632_RS01230 at 259.878 kb on - strand, within LU632_RS01230 at 259.880 kb on + strand, within LU632_RS01230 at 260.015 kb on + strand, within LU632_RS01230 at 260.142 kb on + strand, within LU632_RS01235 at 260.143 kb on - strand, within LU632_RS01235 at 260.184 kb on - strand, within LU632_RS01235 at 260.241 kb on + strand, within LU632_RS01235 at 260.241 kb on + strand, within LU632_RS01235 at 260.278 kb on + strand, within LU632_RS01235 at 260.282 kb on + strand, within LU632_RS01235 at 260.282 kb on + strand, within LU632_RS01235 at 260.282 kb on + strand, within LU632_RS01235 at 260.282 kb on + strand, within LU632_RS01235 at 260.282 kb on + strand, within LU632_RS01235 at 260.283 kb on - strand, within LU632_RS01235 at 260.283 kb on - strand, within LU632_RS01235 at 260.344 kb on + strand, within LU632_RS01235 at 260.375 kb on + strand, within LU632_RS01235 at 260.376 kb on - strand, within LU632_RS01235 at 260.378 kb on + strand, within LU632_RS01235 at 260.379 kb on - strand, within LU632_RS01235 at 260.379 kb on - strand, within LU632_RS01235 at 260.416 kb on + strand, within LU632_RS01235 at 260.416 kb on + strand, within LU632_RS01235 at 260.675 kb on + strand at 260.675 kb on + strand at 260.675 kb on + strand at 260.676 kb on - strand at 260.677 kb on + strand at 260.678 kb on - strand at 260.678 kb on - strand at 260.763 kb on - strand, within LU632_RS01240 at 260.763 kb on - strand, within LU632_RS01240 at 260.763 kb on - strand, within LU632_RS01240 at 260.858 kb on - strand, within LU632_RS01240 at 260.949 kb on + strand, within LU632_RS01240 at 260.990 kb on - strand, within LU632_RS01240 at 261.005 kb on - strand, within LU632_RS01240 at 261.005 kb on - strand, within LU632_RS01240 at 261.008 kb on - strand, within LU632_RS01240 at 261.129 kb on + strand at 261.129 kb on + strand at 261.129 kb on + strand at 261.130 kb on - strand at 261.133 kb on + strand at 261.133 kb on + strand at 261.133 kb on + strand at 261.134 kb on - strand at 261.139 kb on + strand at 261.140 kb on - strand at 261.140 kb on - strand at 261.140 kb on - strand at 261.272 kb on + strand, within LU632_RS01245 at 261.340 kb on - strand, within LU632_RS01245 at 261.576 kb on + strand, within LU632_RS01245 at 261.602 kb on + strand, within LU632_RS01245 at 261.603 kb on - strand, within LU632_RS01245 at 261.732 kb on + strand, within LU632_RS01245 at 261.773 kb on - strand, within LU632_RS01245 at 261.813 kb on + strand, within LU632_RS01245 at 261.871 kb on - strand, within LU632_RS01245 at 261.871 kb on - strand, within LU632_RS01245 at 261.978 kb on - strand, within LU632_RS01245
Per-strain Table
Position Strand Gene LocusTag Fraction MJM9 remove 259,714 + LU632_RS01225 0.87 +0.6 259,714 + LU632_RS01225 0.87 -0.5 259,714 + LU632_RS01225 0.87 +0.0 259,714 + LU632_RS01225 0.87 +0.7 259,715 - LU632_RS01225 0.87 +1.1 259,715 - LU632_RS01225 0.87 +0.7 259,715 - LU632_RS01225 0.87 -0.0 259,715 - LU632_RS01225 0.87 +1.7 259,715 - LU632_RS01225 0.87 +0.1 259,715 - LU632_RS01225 0.87 -0.7 259,715 - LU632_RS01225 0.87 +0.5 259,734 + -1.1 259,877 + LU632_RS01230 0.11 +1.1 259,878 - LU632_RS01230 0.11 +0.2 259,878 - LU632_RS01230 0.11 -0.2 259,880 + LU632_RS01230 0.12 -0.1 260,015 + LU632_RS01230 0.84 -1.4 260,142 + LU632_RS01235 0.14 -0.3 260,143 - LU632_RS01235 0.14 -0.6 260,184 - LU632_RS01235 0.21 +0.5 260,241 + LU632_RS01235 0.31 +1.2 260,241 + LU632_RS01235 0.31 +0.6 260,278 + LU632_RS01235 0.38 -0.6 260,282 + LU632_RS01235 0.39 -0.2 260,282 + LU632_RS01235 0.39 +0.0 260,282 + LU632_RS01235 0.39 +0.9 260,282 + LU632_RS01235 0.39 +0.4 260,282 + LU632_RS01235 0.39 +0.5 260,283 - LU632_RS01235 0.39 +0.1 260,283 - LU632_RS01235 0.39 -0.1 260,344 + LU632_RS01235 0.50 +0.2 260,375 + LU632_RS01235 0.55 +0.3 260,376 - LU632_RS01235 0.55 +0.1 260,378 + LU632_RS01235 0.56 +0.3 260,379 - LU632_RS01235 0.56 -0.1 260,379 - LU632_RS01235 0.56 -1.7 260,416 + LU632_RS01235 0.62 +2.4 260,416 + LU632_RS01235 0.62 -0.6 260,675 + -0.1 260,675 + -0.8 260,675 + -0.5 260,676 - +1.5 260,677 + +0.9 260,678 - -0.5 260,678 - -0.0 260,763 - LU632_RS01240 0.19 +0.4 260,763 - LU632_RS01240 0.19 -0.2 260,763 - LU632_RS01240 0.19 +0.9 260,858 - LU632_RS01240 0.45 +0.5 260,949 + LU632_RS01240 0.69 +0.7 260,990 - LU632_RS01240 0.80 +1.9 261,005 - LU632_RS01240 0.85 -0.0 261,005 - LU632_RS01240 0.85 +0.2 261,008 - LU632_RS01240 0.85 +0.9 261,129 + -0.3 261,129 + +0.4 261,129 + -0.1 261,130 - -0.2 261,133 + +0.2 261,133 + -0.1 261,133 + -0.3 261,134 - -0.1 261,139 + +0.6 261,140 - +0.3 261,140 - -0.2 261,140 - -1.0 261,272 + LU632_RS01245 0.17 -0.4 261,340 - LU632_RS01245 0.24 -1.1 261,576 + LU632_RS01245 0.48 +0.5 261,602 + LU632_RS01245 0.51 -0.3 261,603 - LU632_RS01245 0.51 +0.5 261,732 + LU632_RS01245 0.64 +0.9 261,773 - LU632_RS01245 0.68 -0.2 261,813 + LU632_RS01245 0.72 +1.7 261,871 - LU632_RS01245 0.78 +0.7 261,871 - LU632_RS01245 0.78 +0.1 261,978 - LU632_RS01245 0.89 +1.6
Or see this region's nucleotide sequence