Experiment: Bas48
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02720 and ECD_04357 are separated by 1 nucleotides ECD_04357 and ECD_02721 are separated by 122 nucleotides ECD_02721 and ECD_02722 are separated by 42 nucleotides
ECD_02720: ECD_02720 - uric acid permease, at 2,862,228 to 2,863,676
_02720
ECD_04357: ECD_04357 - small predicted membrane protein, at 2,863,678 to 2,863,803
_04357
ECD_02721: ECD_02721 - isopentenyl diphosphate isomerase, at 2,863,926 to 2,864,474
_02721
ECD_02722: ECD_02722 - lysine tRNA synthetase, constitutive, at 2,864,517 to 2,866,034
_02722
Position (kb)
2863
2864 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2862.692 kb on + strand, within ECD_02720 at 2862.692 kb on + strand, within ECD_02720 at 2862.693 kb on - strand, within ECD_02720 at 2862.693 kb on - strand, within ECD_02720 at 2862.693 kb on - strand, within ECD_02720 at 2862.698 kb on + strand, within ECD_02720 at 2862.708 kb on - strand, within ECD_02720 at 2862.708 kb on - strand, within ECD_02720 at 2862.781 kb on + strand, within ECD_02720 at 2862.781 kb on + strand, within ECD_02720 at 2862.785 kb on + strand, within ECD_02720 at 2862.842 kb on + strand, within ECD_02720 at 2862.874 kb on + strand, within ECD_02720 at 2862.925 kb on + strand, within ECD_02720 at 2862.926 kb on - strand, within ECD_02720 at 2862.971 kb on + strand, within ECD_02720 at 2863.079 kb on + strand, within ECD_02720 at 2863.138 kb on + strand, within ECD_02720 at 2863.138 kb on + strand, within ECD_02720 at 2863.246 kb on + strand, within ECD_02720 at 2863.246 kb on + strand, within ECD_02720 at 2863.247 kb on - strand, within ECD_02720 at 2863.249 kb on + strand, within ECD_02720 at 2863.327 kb on + strand, within ECD_02720 at 2863.346 kb on - strand, within ECD_02720 at 2863.380 kb on - strand, within ECD_02720 at 2863.384 kb on - strand, within ECD_02720 at 2863.398 kb on + strand, within ECD_02720 at 2863.407 kb on + strand, within ECD_02720 at 2863.407 kb on + strand, within ECD_02720 at 2863.408 kb on - strand, within ECD_02720 at 2863.408 kb on - strand, within ECD_02720 at 2863.408 kb on - strand, within ECD_02720 at 2863.409 kb on + strand, within ECD_02720 at 2863.409 kb on + strand, within ECD_02720 at 2863.410 kb on - strand, within ECD_02720 at 2863.469 kb on + strand, within ECD_02720 at 2863.469 kb on + strand, within ECD_02720 at 2863.484 kb on - strand, within ECD_02720 at 2863.498 kb on + strand, within ECD_02720 at 2863.498 kb on + strand, within ECD_02720 at 2863.499 kb on - strand, within ECD_02720 at 2863.499 kb on - strand, within ECD_02720 at 2863.499 kb on - strand, within ECD_02720 at 2863.503 kb on - strand, within ECD_02720 at 2863.503 kb on - strand, within ECD_02720 at 2863.511 kb on + strand, within ECD_02720 at 2863.511 kb on + strand, within ECD_02720 at 2863.624 kb on + strand at 2863.628 kb on + strand at 2863.628 kb on + strand at 2863.628 kb on + strand at 2863.629 kb on - strand at 2863.629 kb on - strand at 2863.678 kb on - strand at 2863.688 kb on + strand at 2863.700 kb on + strand, within ECD_04357 at 2863.701 kb on - strand, within ECD_04357 at 2863.722 kb on + strand, within ECD_04357 at 2863.783 kb on + strand, within ECD_04357 at 2863.783 kb on + strand, within ECD_04357 at 2863.785 kb on + strand, within ECD_04357 at 2863.785 kb on + strand, within ECD_04357 at 2863.812 kb on + strand at 2863.885 kb on + strand at 2863.889 kb on + strand at 2863.889 kb on + strand at 2863.889 kb on + strand at 2863.911 kb on + strand at 2863.911 kb on + strand at 2863.925 kb on + strand at 2863.989 kb on + strand, within ECD_02721 at 2864.017 kb on + strand, within ECD_02721 at 2864.017 kb on + strand, within ECD_02721 at 2864.018 kb on - strand, within ECD_02721 at 2864.018 kb on - strand, within ECD_02721 at 2864.018 kb on - strand, within ECD_02721 at 2864.045 kb on + strand, within ECD_02721 at 2864.062 kb on + strand, within ECD_02721 at 2864.065 kb on + strand, within ECD_02721 at 2864.065 kb on + strand, within ECD_02721 at 2864.065 kb on + strand, within ECD_02721 at 2864.065 kb on + strand, within ECD_02721 at 2864.065 kb on + strand, within ECD_02721 at 2864.065 kb on + strand, within ECD_02721 at 2864.066 kb on - strand, within ECD_02721 at 2864.114 kb on + strand, within ECD_02721 at 2864.114 kb on + strand, within ECD_02721 at 2864.115 kb on - strand, within ECD_02721 at 2864.216 kb on + strand, within ECD_02721 at 2864.220 kb on + strand, within ECD_02721 at 2864.220 kb on + strand, within ECD_02721 at 2864.220 kb on + strand, within ECD_02721 at 2864.340 kb on + strand, within ECD_02721 at 2864.365 kb on + strand, within ECD_02721 at 2864.365 kb on + strand, within ECD_02721 at 2864.365 kb on + strand, within ECD_02721 at 2864.365 kb on + strand, within ECD_02721 at 2864.365 kb on + strand, within ECD_02721 at 2864.365 kb on + strand, within ECD_02721 at 2864.366 kb on - strand, within ECD_02721 at 2864.368 kb on + strand, within ECD_02721 at 2864.368 kb on + strand, within ECD_02721 at 2864.506 kb on + strand at 2864.511 kb on + strand at 2864.511 kb on + strand at 2864.511 kb on + strand at 2864.518 kb on + strand at 2864.518 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas48 remove 2,862,692 + ECD_02720 0.32 -0.4 2,862,692 + ECD_02720 0.32 -0.6 2,862,693 - ECD_02720 0.32 -3.0 2,862,693 - ECD_02720 0.32 -1.0 2,862,693 - ECD_02720 0.32 +0.6 2,862,698 + ECD_02720 0.32 -1.0 2,862,708 - ECD_02720 0.33 -0.5 2,862,708 - ECD_02720 0.33 +3.3 2,862,781 + ECD_02720 0.38 +1.7 2,862,781 + ECD_02720 0.38 +0.2 2,862,785 + ECD_02720 0.38 -0.9 2,862,842 + ECD_02720 0.42 +0.4 2,862,874 + ECD_02720 0.45 -0.5 2,862,925 + ECD_02720 0.48 -1.0 2,862,926 - ECD_02720 0.48 +0.1 2,862,971 + ECD_02720 0.51 -0.9 2,863,079 + ECD_02720 0.59 +0.7 2,863,138 + ECD_02720 0.63 +0.6 2,863,138 + ECD_02720 0.63 +0.1 2,863,246 + ECD_02720 0.70 +0.1 2,863,246 + ECD_02720 0.70 +1.0 2,863,247 - ECD_02720 0.70 +0.5 2,863,249 + ECD_02720 0.70 +0.3 2,863,327 + ECD_02720 0.76 -0.7 2,863,346 - ECD_02720 0.77 -1.6 2,863,380 - ECD_02720 0.80 -1.3 2,863,384 - ECD_02720 0.80 +2.4 2,863,398 + ECD_02720 0.81 +1.7 2,863,407 + ECD_02720 0.81 -0.0 2,863,407 + ECD_02720 0.81 -0.8 2,863,408 - ECD_02720 0.81 +0.7 2,863,408 - ECD_02720 0.81 -0.5 2,863,408 - ECD_02720 0.81 -0.5 2,863,409 + ECD_02720 0.82 +1.5 2,863,409 + ECD_02720 0.82 -1.6 2,863,410 - ECD_02720 0.82 +0.2 2,863,469 + ECD_02720 0.86 -0.1 2,863,469 + ECD_02720 0.86 -0.0 2,863,484 - ECD_02720 0.87 -0.2 2,863,498 + ECD_02720 0.88 -0.3 2,863,498 + ECD_02720 0.88 -0.0 2,863,499 - ECD_02720 0.88 -1.3 2,863,499 - ECD_02720 0.88 -1.2 2,863,499 - ECD_02720 0.88 +0.1 2,863,503 - ECD_02720 0.88 +0.2 2,863,503 - ECD_02720 0.88 +1.7 2,863,511 + ECD_02720 0.89 -0.1 2,863,511 + ECD_02720 0.89 -0.0 2,863,624 + +0.8 2,863,628 + +0.1 2,863,628 + +0.5 2,863,628 + -0.3 2,863,629 - -0.0 2,863,629 - -1.0 2,863,678 - -0.5 2,863,688 + -0.6 2,863,700 + ECD_04357 0.17 -1.6 2,863,701 - ECD_04357 0.18 +0.2 2,863,722 + ECD_04357 0.35 -0.4 2,863,783 + ECD_04357 0.83 -1.5 2,863,783 + ECD_04357 0.83 +0.5 2,863,785 + ECD_04357 0.85 -0.2 2,863,785 + ECD_04357 0.85 -0.7 2,863,812 + +1.5 2,863,885 + -0.6 2,863,889 + +0.2 2,863,889 + -1.1 2,863,889 + -1.0 2,863,911 + -2.0 2,863,911 + -0.4 2,863,925 + -0.7 2,863,989 + ECD_02721 0.11 -0.0 2,864,017 + ECD_02721 0.17 +0.3 2,864,017 + ECD_02721 0.17 +1.6 2,864,018 - ECD_02721 0.17 -0.5 2,864,018 - ECD_02721 0.17 +0.4 2,864,018 - ECD_02721 0.17 -0.0 2,864,045 + ECD_02721 0.22 +0.5 2,864,062 + ECD_02721 0.25 -0.0 2,864,065 + ECD_02721 0.25 -2.0 2,864,065 + ECD_02721 0.25 -0.0 2,864,065 + ECD_02721 0.25 +0.0 2,864,065 + ECD_02721 0.25 +0.4 2,864,065 + ECD_02721 0.25 -0.9 2,864,065 + ECD_02721 0.25 -0.2 2,864,066 - ECD_02721 0.26 +1.3 2,864,114 + ECD_02721 0.34 +2.3 2,864,114 + ECD_02721 0.34 -0.8 2,864,115 - ECD_02721 0.34 -0.2 2,864,216 + ECD_02721 0.53 +1.4 2,864,220 + ECD_02721 0.54 -1.3 2,864,220 + ECD_02721 0.54 +1.4 2,864,220 + ECD_02721 0.54 -0.5 2,864,340 + ECD_02721 0.75 -0.0 2,864,365 + ECD_02721 0.80 -0.6 2,864,365 + ECD_02721 0.80 +0.1 2,864,365 + ECD_02721 0.80 +1.4 2,864,365 + ECD_02721 0.80 +0.6 2,864,365 + ECD_02721 0.80 -0.6 2,864,365 + ECD_02721 0.80 -0.1 2,864,366 - ECD_02721 0.80 +1.1 2,864,368 + ECD_02721 0.81 +0.6 2,864,368 + ECD_02721 0.81 -1.1 2,864,506 + -0.7 2,864,511 + +0.1 2,864,511 + -1.3 2,864,511 + +0.6 2,864,518 + -2.0 2,864,518 + -0.7
Or see this region's nucleotide sequence