Strain Fitness in Escherichia coli BL21 around ECD_04074

Experiment: Bas48

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_04073 and ECD_04074 are separated by 9 nucleotidesECD_04074 and ECD_04075 are separated by 9 nucleotidesECD_04075 and ECD_04076 are separated by 9 nucleotides ECD_04073: ECD_04073 - putative acetyl-CoA:acetoacetyl-CoA transferase, at 4,336,618 to 4,338,159 _04073 ECD_04074: ECD_04074 - hypothetical protein, at 4,338,169 to 4,338,945 _04074 ECD_04075: ECD_04075 - hypothetical protein, at 4,338,955 to 4,339,797 _04075 ECD_04076: ECD_04076 - putative oxoacyl reductase, at 4,339,807 to 4,340,598 _04076 Position (kb) 4338 4339Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4337.175 kb on + strand, within ECD_04073at 4337.175 kb on + strand, within ECD_04073at 4337.176 kb on - strand, within ECD_04073at 4337.179 kb on + strand, within ECD_04073at 4337.179 kb on + strand, within ECD_04073at 4337.180 kb on - strand, within ECD_04073at 4337.180 kb on - strand, within ECD_04073at 4337.361 kb on + strand, within ECD_04073at 4337.522 kb on - strand, within ECD_04073at 4337.567 kb on + strand, within ECD_04073at 4337.567 kb on + strand, within ECD_04073at 4337.568 kb on - strand, within ECD_04073at 4337.568 kb on - strand, within ECD_04073at 4337.571 kb on + strand, within ECD_04073at 4337.624 kb on + strand, within ECD_04073at 4337.624 kb on + strand, within ECD_04073at 4337.624 kb on + strand, within ECD_04073at 4337.625 kb on - strand, within ECD_04073at 4337.705 kb on - strand, within ECD_04073at 4337.719 kb on - strand, within ECD_04073at 4337.852 kb on + strand, within ECD_04073at 4337.920 kb on - strand, within ECD_04073at 4337.955 kb on + strand, within ECD_04073at 4338.057 kb on + strandat 4338.057 kb on + strandat 4338.097 kb on - strandat 4338.097 kb on - strandat 4338.154 kb on - strandat 4338.285 kb on + strand, within ECD_04074at 4338.286 kb on - strand, within ECD_04074at 4338.312 kb on + strand, within ECD_04074at 4338.312 kb on + strand, within ECD_04074at 4338.313 kb on - strand, within ECD_04074at 4338.313 kb on - strand, within ECD_04074at 4338.313 kb on - strand, within ECD_04074at 4338.409 kb on + strand, within ECD_04074at 4338.577 kb on - strand, within ECD_04074at 4338.607 kb on - strand, within ECD_04074at 4338.711 kb on + strand, within ECD_04074at 4338.742 kb on - strand, within ECD_04074at 4338.876 kb on + strandat 4338.877 kb on - strandat 4339.048 kb on - strand, within ECD_04075at 4339.154 kb on - strand, within ECD_04075at 4339.313 kb on - strand, within ECD_04075at 4339.424 kb on - strand, within ECD_04075at 4339.485 kb on + strand, within ECD_04075at 4339.485 kb on + strand, within ECD_04075at 4339.486 kb on - strand, within ECD_04075at 4339.486 kb on - strand, within ECD_04075at 4339.487 kb on + strand, within ECD_04075at 4339.487 kb on + strand, within ECD_04075at 4339.487 kb on + strand, within ECD_04075at 4339.487 kb on + strand, within ECD_04075at 4339.487 kb on + strand, within ECD_04075at 4339.487 kb on + strand, within ECD_04075at 4339.488 kb on - strand, within ECD_04075at 4339.577 kb on + strand, within ECD_04075at 4339.578 kb on - strand, within ECD_04075at 4339.580 kb on + strand, within ECD_04075at 4339.581 kb on - strand, within ECD_04075at 4339.581 kb on - strand, within ECD_04075at 4339.761 kb on + strandat 4339.762 kb on - strandat 4339.825 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas48
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4,337,175 + ECD_04073 0.36 +0.6
4,337,175 + ECD_04073 0.36 -0.5
4,337,176 - ECD_04073 0.36 +0.1
4,337,179 + ECD_04073 0.36 -0.5
4,337,179 + ECD_04073 0.36 -1.4
4,337,180 - ECD_04073 0.36 -0.2
4,337,180 - ECD_04073 0.36 -0.4
4,337,361 + ECD_04073 0.48 -0.9
4,337,522 - ECD_04073 0.59 +0.9
4,337,567 + ECD_04073 0.62 -0.4
4,337,567 + ECD_04073 0.62 +1.0
4,337,568 - ECD_04073 0.62 +0.6
4,337,568 - ECD_04073 0.62 +0.8
4,337,571 + ECD_04073 0.62 -0.0
4,337,624 + ECD_04073 0.65 -1.7
4,337,624 + ECD_04073 0.65 -0.4
4,337,624 + ECD_04073 0.65 +0.3
4,337,625 - ECD_04073 0.65 -0.0
4,337,705 - ECD_04073 0.70 -0.2
4,337,719 - ECD_04073 0.71 -0.4
4,337,852 + ECD_04073 0.80 -0.3
4,337,920 - ECD_04073 0.84 +1.6
4,337,955 + ECD_04073 0.87 +0.1
4,338,057 + -0.0
4,338,057 + +0.9
4,338,097 - +1.5
4,338,097 - -1.5
4,338,154 - +0.2
4,338,285 + ECD_04074 0.15 -0.3
4,338,286 - ECD_04074 0.15 -0.4
4,338,312 + ECD_04074 0.18 +0.7
4,338,312 + ECD_04074 0.18 -1.2
4,338,313 - ECD_04074 0.19 +0.0
4,338,313 - ECD_04074 0.19 -0.3
4,338,313 - ECD_04074 0.19 -0.4
4,338,409 + ECD_04074 0.31 -1.3
4,338,577 - ECD_04074 0.53 +0.5
4,338,607 - ECD_04074 0.56 -0.8
4,338,711 + ECD_04074 0.70 +0.2
4,338,742 - ECD_04074 0.74 -0.6
4,338,876 + +0.5
4,338,877 - -0.7
4,339,048 - ECD_04075 0.11 -0.7
4,339,154 - ECD_04075 0.24 -0.2
4,339,313 - ECD_04075 0.42 +0.2
4,339,424 - ECD_04075 0.56 +0.5
4,339,485 + ECD_04075 0.63 +0.5
4,339,485 + ECD_04075 0.63 -1.7
4,339,486 - ECD_04075 0.63 +0.4
4,339,486 - ECD_04075 0.63 -0.4
4,339,487 + ECD_04075 0.63 -0.4
4,339,487 + ECD_04075 0.63 -0.7
4,339,487 + ECD_04075 0.63 -2.4
4,339,487 + ECD_04075 0.63 +0.0
4,339,487 + ECD_04075 0.63 +0.5
4,339,487 + ECD_04075 0.63 +0.0
4,339,488 - ECD_04075 0.63 -0.4
4,339,577 + ECD_04075 0.74 -0.1
4,339,578 - ECD_04075 0.74 +0.3
4,339,580 + ECD_04075 0.74 -0.1
4,339,581 - ECD_04075 0.74 +1.3
4,339,581 - ECD_04075 0.74 -0.7
4,339,761 + -1.2
4,339,762 - -0.2
4,339,825 + +3.1

Or see this region's nucleotide sequence