Strain Fitness in Escherichia coli BL21 around ECD_02849

Experiment: Bas48

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02848 and ECD_02849 are separated by 250 nucleotidesECD_02849 and ECD_02850 are separated by 6 nucleotides ECD_02848: ECD_02848 - glycolate oxidase subunit, FAD-linked, at 2,986,761 to 2,988,260 _02848 ECD_02849: ECD_02849 - glycolate-inducible glc operon transcriptional repressor; autorepressor, at 2,988,511 to 2,989,275 _02849 ECD_02850: ECD_02850 - putative DNA-binding transcriptional regulator, at 2,989,282 to 2,990,424 _02850 Position (kb) 2988 2989 2990Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2987.615 kb on + strand, within ECD_02848at 2987.615 kb on + strand, within ECD_02848at 2987.615 kb on + strand, within ECD_02848at 2987.616 kb on - strand, within ECD_02848at 2987.733 kb on + strand, within ECD_02848at 2987.733 kb on + strand, within ECD_02848at 2987.805 kb on + strand, within ECD_02848at 2987.806 kb on - strand, within ECD_02848at 2987.830 kb on + strand, within ECD_02848at 2987.830 kb on + strand, within ECD_02848at 2987.831 kb on - strand, within ECD_02848at 2987.831 kb on - strand, within ECD_02848at 2987.831 kb on - strand, within ECD_02848at 2987.834 kb on - strand, within ECD_02848at 2988.248 kb on - strandat 2988.265 kb on - strandat 2988.265 kb on - strandat 2988.265 kb on - strandat 2988.325 kb on + strandat 2988.326 kb on - strandat 2988.326 kb on - strandat 2988.352 kb on - strandat 2988.359 kb on + strandat 2988.359 kb on + strandat 2988.468 kb on + strandat 2988.468 kb on + strandat 2988.489 kb on + strandat 2988.489 kb on + strandat 2988.490 kb on - strandat 2988.490 kb on - strandat 2988.493 kb on + strandat 2988.493 kb on + strandat 2988.532 kb on - strandat 2988.566 kb on + strandat 2988.570 kb on + strandat 2988.581 kb on + strandat 2988.793 kb on + strand, within ECD_02849at 2988.794 kb on - strand, within ECD_02849at 2988.819 kb on - strand, within ECD_02849at 2988.892 kb on + strand, within ECD_02849at 2989.014 kb on + strand, within ECD_02849at 2989.014 kb on + strand, within ECD_02849at 2989.015 kb on - strand, within ECD_02849at 2989.044 kb on + strand, within ECD_02849at 2989.064 kb on + strand, within ECD_02849at 2989.068 kb on + strand, within ECD_02849at 2989.069 kb on - strand, within ECD_02849at 2989.126 kb on + strand, within ECD_02849at 2989.126 kb on + strand, within ECD_02849at 2989.127 kb on - strand, within ECD_02849at 2989.273 kb on + strandat 2989.274 kb on - strandat 2989.283 kb on + strandat 2989.284 kb on - strandat 2989.299 kb on - strandat 2989.316 kb on + strandat 2989.317 kb on - strandat 2989.347 kb on + strandat 2989.348 kb on - strandat 2989.360 kb on - strandat 2989.363 kb on - strandat 2989.363 kb on - strandat 2989.655 kb on + strand, within ECD_02850at 2989.655 kb on + strand, within ECD_02850at 2989.656 kb on - strand, within ECD_02850at 2989.656 kb on - strand, within ECD_02850at 2989.656 kb on - strand, within ECD_02850at 2989.656 kb on - strand, within ECD_02850at 2989.656 kb on - strand, within ECD_02850at 2989.656 kb on - strand, within ECD_02850at 2989.663 kb on - strand, within ECD_02850at 2989.679 kb on + strand, within ECD_02850at 2989.679 kb on + strand, within ECD_02850at 2989.684 kb on - strand, within ECD_02850at 2989.684 kb on - strand, within ECD_02850at 2989.684 kb on - strand, within ECD_02850at 2989.720 kb on - strand, within ECD_02850at 2990.055 kb on + strand, within ECD_02850at 2990.056 kb on - strand, within ECD_02850at 2990.056 kb on - strand, within ECD_02850at 2990.185 kb on - strand, within ECD_02850at 2990.185 kb on - strand, within ECD_02850at 2990.185 kb on - strand, within ECD_02850at 2990.188 kb on + strand, within ECD_02850at 2990.188 kb on + strand, within ECD_02850at 2990.189 kb on - strand, within ECD_02850at 2990.203 kb on - strand, within ECD_02850at 2990.212 kb on + strand, within ECD_02850at 2990.213 kb on - strand, within ECD_02850at 2990.213 kb on - strand, within ECD_02850at 2990.213 kb on - strand, within ECD_02850at 2990.213 kb on - strand, within ECD_02850

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas48
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2,987,615 + ECD_02848 0.57 -2.4
2,987,615 + ECD_02848 0.57 +1.5
2,987,615 + ECD_02848 0.57 +2.5
2,987,616 - ECD_02848 0.57 -0.3
2,987,733 + ECD_02848 0.65 +0.2
2,987,733 + ECD_02848 0.65 -0.9
2,987,805 + ECD_02848 0.70 -1.0
2,987,806 - ECD_02848 0.70 -0.2
2,987,830 + ECD_02848 0.71 -0.4
2,987,830 + ECD_02848 0.71 -3.2
2,987,831 - ECD_02848 0.71 -0.8
2,987,831 - ECD_02848 0.71 -1.2
2,987,831 - ECD_02848 0.71 -2.5
2,987,834 - ECD_02848 0.72 -2.0
2,988,248 - -0.8
2,988,265 - +1.7
2,988,265 - -0.6
2,988,265 - +0.5
2,988,325 + -0.5
2,988,326 - -1.6
2,988,326 - -1.8
2,988,352 - -0.6
2,988,359 + -1.5
2,988,359 + -0.7
2,988,468 + +0.7
2,988,468 + +2.5
2,988,489 + -0.2
2,988,489 + +1.5
2,988,490 - -1.6
2,988,490 - -0.0
2,988,493 + -0.3
2,988,493 + +0.1
2,988,532 - +1.6
2,988,566 + +0.8
2,988,570 + -1.9
2,988,581 + -0.9
2,988,793 + ECD_02849 0.37 -0.0
2,988,794 - ECD_02849 0.37 -1.0
2,988,819 - ECD_02849 0.40 -0.7
2,988,892 + ECD_02849 0.50 +2.1
2,989,014 + ECD_02849 0.66 -0.4
2,989,014 + ECD_02849 0.66 +1.3
2,989,015 - ECD_02849 0.66 +0.4
2,989,044 + ECD_02849 0.70 +0.6
2,989,064 + ECD_02849 0.72 +1.8
2,989,068 + ECD_02849 0.73 -0.5
2,989,069 - ECD_02849 0.73 +1.0
2,989,126 + ECD_02849 0.80 +2.5
2,989,126 + ECD_02849 0.80 +2.1
2,989,127 - ECD_02849 0.81 -0.0
2,989,273 + -0.5
2,989,274 - +0.8
2,989,283 + +0.8
2,989,284 - +0.7
2,989,299 - -0.3
2,989,316 + +0.3
2,989,317 - -0.0
2,989,347 + -0.4
2,989,348 - -0.6
2,989,360 - -0.7
2,989,363 - -0.6
2,989,363 - -1.9
2,989,655 + ECD_02850 0.33 -0.1
2,989,655 + ECD_02850 0.33 -0.0
2,989,656 - ECD_02850 0.33 -0.0
2,989,656 - ECD_02850 0.33 -1.8
2,989,656 - ECD_02850 0.33 +2.5
2,989,656 - ECD_02850 0.33 -1.4
2,989,656 - ECD_02850 0.33 +0.2
2,989,656 - ECD_02850 0.33 +1.5
2,989,663 - ECD_02850 0.33 -0.2
2,989,679 + ECD_02850 0.35 +1.9
2,989,679 + ECD_02850 0.35 -0.0
2,989,684 - ECD_02850 0.35 -0.3
2,989,684 - ECD_02850 0.35 +0.9
2,989,684 - ECD_02850 0.35 -1.2
2,989,720 - ECD_02850 0.38 +0.3
2,990,055 + ECD_02850 0.68 +0.7
2,990,056 - ECD_02850 0.68 -0.6
2,990,056 - ECD_02850 0.68 +2.3
2,990,185 - ECD_02850 0.79 +0.4
2,990,185 - ECD_02850 0.79 +0.6
2,990,185 - ECD_02850 0.79 +1.0
2,990,188 + ECD_02850 0.79 -0.0
2,990,188 + ECD_02850 0.79 +0.1
2,990,189 - ECD_02850 0.79 +0.8
2,990,203 - ECD_02850 0.81 -0.7
2,990,212 + ECD_02850 0.81 +1.2
2,990,213 - ECD_02850 0.81 +0.8
2,990,213 - ECD_02850 0.81 -0.3
2,990,213 - ECD_02850 0.81 +0.7
2,990,213 - ECD_02850 0.81 +1.2

Or see this region's nucleotide sequence