Experiment: Bas48
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02655 and ECD_02656 are separated by 57 nucleotides ECD_02656 and ECD_02657 are separated by 43 nucleotides ECD_02657 and ECD_02658 overlap by 8 nucleotides ECD_02658 and ECD_02659 are separated by 18 nucleotides
ECD_02655: ECD_02655 - L-fucose mutarotase, at 2,777,168 to 2,777,590
_02655
ECD_02656: ECD_02656 - l-fucose operon activator, at 2,777,648 to 2,778,379
_02656
ECD_02657: ECD_02657 - 23S rRNA C2498 2'-O-ribose methyltransferase, SAM-dependent, at 2,778,423 to 2,779,523
_02657
ECD_02658: ECD_02658 - UPF0382 family inner membrane protein, at 2,779,516 to 2,779,911
_02658
ECD_02659: ECD_02659 - glycine cleavage system transcriptional activator; autorepressor, at 2,779,930 to 2,780,847
_02659
Position (kb)
2778
2779
2780 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2777.438 kb on - strand, within ECD_02655 at 2777.452 kb on - strand, within ECD_02655 at 2777.498 kb on + strand, within ECD_02655 at 2777.499 kb on - strand, within ECD_02655 at 2777.560 kb on + strand at 2777.588 kb on + strand at 2777.596 kb on + strand at 2777.596 kb on + strand at 2777.647 kb on + strand at 2777.673 kb on + strand at 2777.695 kb on + strand at 2777.695 kb on + strand at 2777.695 kb on + strand at 2777.741 kb on - strand, within ECD_02656 at 2777.812 kb on + strand, within ECD_02656 at 2777.816 kb on + strand, within ECD_02656 at 2777.816 kb on + strand, within ECD_02656 at 2777.816 kb on + strand, within ECD_02656 at 2777.816 kb on + strand, within ECD_02656 at 2777.817 kb on - strand, within ECD_02656 at 2777.817 kb on - strand, within ECD_02656 at 2777.817 kb on - strand, within ECD_02656 at 2777.818 kb on + strand, within ECD_02656 at 2777.818 kb on + strand, within ECD_02656 at 2777.819 kb on - strand, within ECD_02656 at 2777.876 kb on + strand, within ECD_02656 at 2777.943 kb on + strand, within ECD_02656 at 2777.943 kb on + strand, within ECD_02656 at 2777.966 kb on + strand, within ECD_02656 at 2778.014 kb on - strand, within ECD_02656 at 2778.092 kb on + strand, within ECD_02656 at 2778.092 kb on + strand, within ECD_02656 at 2778.093 kb on - strand, within ECD_02656 at 2778.093 kb on - strand, within ECD_02656 at 2778.101 kb on + strand, within ECD_02656 at 2778.102 kb on - strand, within ECD_02656 at 2778.102 kb on - strand, within ECD_02656 at 2778.102 kb on - strand, within ECD_02656 at 2778.102 kb on - strand, within ECD_02656 at 2778.130 kb on + strand, within ECD_02656 at 2778.131 kb on - strand, within ECD_02656 at 2778.237 kb on + strand, within ECD_02656 at 2778.271 kb on + strand, within ECD_02656 at 2778.277 kb on + strand, within ECD_02656 at 2778.324 kb on + strand at 2778.334 kb on + strand at 2778.334 kb on + strand at 2778.334 kb on + strand at 2778.334 kb on + strand at 2778.500 kb on - strand at 2778.500 kb on - strand at 2778.528 kb on + strand at 2778.529 kb on - strand at 2778.529 kb on - strand at 2778.529 kb on - strand at 2778.558 kb on - strand, within ECD_02657 at 2778.559 kb on + strand, within ECD_02657 at 2778.559 kb on + strand, within ECD_02657 at 2778.559 kb on + strand, within ECD_02657 at 2778.559 kb on + strand, within ECD_02657 at 2778.560 kb on - strand, within ECD_02657 at 2778.560 kb on - strand, within ECD_02657 at 2778.560 kb on - strand, within ECD_02657 at 2778.560 kb on - strand, within ECD_02657 at 2778.560 kb on - strand, within ECD_02657 at 2778.699 kb on + strand, within ECD_02657 at 2778.713 kb on + strand, within ECD_02657 at 2778.714 kb on - strand, within ECD_02657 at 2778.714 kb on - strand, within ECD_02657 at 2778.714 kb on - strand, within ECD_02657 at 2778.714 kb on - strand, within ECD_02657 at 2778.714 kb on - strand, within ECD_02657 at 2778.714 kb on - strand, within ECD_02657 at 2778.714 kb on - strand, within ECD_02657 at 2778.714 kb on - strand, within ECD_02657 at 2778.815 kb on - strand, within ECD_02657 at 2778.844 kb on + strand, within ECD_02657 at 2778.845 kb on - strand, within ECD_02657 at 2778.926 kb on + strand, within ECD_02657 at 2778.927 kb on - strand, within ECD_02657 at 2778.927 kb on - strand, within ECD_02657 at 2778.927 kb on - strand, within ECD_02657 at 2778.927 kb on - strand, within ECD_02657 at 2778.927 kb on - strand, within ECD_02657 at 2779.008 kb on - strand, within ECD_02657 at 2779.008 kb on - strand, within ECD_02657 at 2779.009 kb on + strand, within ECD_02657 at 2779.009 kb on + strand, within ECD_02657 at 2779.009 kb on + strand, within ECD_02657 at 2779.009 kb on + strand, within ECD_02657 at 2779.010 kb on - strand, within ECD_02657 at 2779.010 kb on - strand, within ECD_02657 at 2779.010 kb on - strand, within ECD_02657 at 2779.010 kb on - strand, within ECD_02657 at 2779.010 kb on - strand, within ECD_02657 at 2779.010 kb on - strand, within ECD_02657 at 2779.010 kb on - strand, within ECD_02657 at 2779.010 kb on - strand, within ECD_02657 at 2779.010 kb on - strand, within ECD_02657 at 2779.010 kb on - strand, within ECD_02657 at 2779.010 kb on - strand, within ECD_02657 at 2779.034 kb on - strand, within ECD_02657 at 2779.034 kb on - strand, within ECD_02657 at 2779.034 kb on - strand, within ECD_02657 at 2779.034 kb on - strand, within ECD_02657 at 2779.039 kb on + strand, within ECD_02657 at 2779.048 kb on + strand, within ECD_02657 at 2779.048 kb on + strand, within ECD_02657 at 2779.048 kb on + strand, within ECD_02657 at 2779.049 kb on - strand, within ECD_02657 at 2779.049 kb on - strand, within ECD_02657 at 2779.068 kb on - strand, within ECD_02657 at 2779.074 kb on + strand, within ECD_02657 at 2779.074 kb on + strand, within ECD_02657 at 2779.074 kb on + strand, within ECD_02657 at 2779.075 kb on - strand, within ECD_02657 at 2779.075 kb on - strand, within ECD_02657 at 2779.075 kb on - strand, within ECD_02657 at 2779.075 kb on - strand, within ECD_02657 at 2779.075 kb on - strand, within ECD_02657 at 2779.075 kb on - strand, within ECD_02657 at 2779.075 kb on - strand, within ECD_02657 at 2779.075 kb on - strand, within ECD_02657 at 2779.075 kb on - strand, within ECD_02657 at 2779.106 kb on - strand, within ECD_02657 at 2779.234 kb on - strand, within ECD_02657 at 2779.236 kb on + strand, within ECD_02657 at 2779.236 kb on + strand, within ECD_02657 at 2779.236 kb on + strand, within ECD_02657 at 2779.268 kb on + strand, within ECD_02657 at 2779.269 kb on - strand, within ECD_02657 at 2779.269 kb on - strand, within ECD_02657 at 2779.269 kb on - strand, within ECD_02657 at 2779.360 kb on - strand, within ECD_02657 at 2779.402 kb on + strand, within ECD_02657 at 2779.402 kb on + strand, within ECD_02657 at 2779.509 kb on + strand at 2779.509 kb on + strand at 2779.509 kb on + strand at 2779.510 kb on - strand at 2779.510 kb on - strand at 2779.510 kb on - strand at 2779.510 kb on - strand at 2779.510 kb on - strand at 2779.510 kb on - strand at 2779.510 kb on - strand at 2779.510 kb on - strand at 2779.510 kb on - strand at 2779.518 kb on - strand at 2779.518 kb on - strand at 2779.528 kb on + strand at 2779.528 kb on + strand at 2779.529 kb on - strand at 2779.529 kb on - strand at 2779.561 kb on + strand, within ECD_02658 at 2779.562 kb on - strand, within ECD_02658 at 2779.562 kb on - strand, within ECD_02658 at 2779.562 kb on - strand, within ECD_02658 at 2779.562 kb on - strand, within ECD_02658 at 2779.562 kb on - strand, within ECD_02658 at 2779.562 kb on - strand, within ECD_02658 at 2779.562 kb on - strand, within ECD_02658 at 2779.650 kb on - strand, within ECD_02658 at 2779.695 kb on + strand, within ECD_02658 at 2779.704 kb on - strand, within ECD_02658 at 2779.748 kb on - strand, within ECD_02658 at 2779.748 kb on - strand, within ECD_02658 at 2779.748 kb on - strand, within ECD_02658 at 2779.748 kb on - strand, within ECD_02658 at 2779.748 kb on - strand, within ECD_02658 at 2779.762 kb on - strand, within ECD_02658 at 2779.775 kb on + strand, within ECD_02658 at 2779.775 kb on + strand, within ECD_02658 at 2779.776 kb on - strand, within ECD_02658 at 2779.824 kb on + strand, within ECD_02658 at 2779.825 kb on - strand, within ECD_02658 at 2779.825 kb on - strand, within ECD_02658 at 2779.825 kb on - strand, within ECD_02658 at 2779.829 kb on - strand, within ECD_02658 at 2779.829 kb on - strand, within ECD_02658 at 2779.896 kb on + strand at 2779.896 kb on + strand at 2779.896 kb on + strand at 2779.897 kb on - strand at 2779.897 kb on - strand at 2779.897 kb on - strand at 2779.897 kb on - strand at 2779.897 kb on - strand at 2779.922 kb on + strand at 2779.923 kb on - strand at 2779.927 kb on - strand at 2779.932 kb on - strand at 2780.046 kb on - strand, within ECD_02659 at 2780.046 kb on - strand, within ECD_02659 at 2780.046 kb on - strand, within ECD_02659 at 2780.128 kb on - strand, within ECD_02659 at 2780.215 kb on - strand, within ECD_02659 at 2780.215 kb on - strand, within ECD_02659 at 2780.239 kb on - strand, within ECD_02659 at 2780.239 kb on - strand, within ECD_02659 at 2780.240 kb on + strand, within ECD_02659 at 2780.240 kb on + strand, within ECD_02659 at 2780.240 kb on + strand, within ECD_02659 at 2780.240 kb on + strand, within ECD_02659 at 2780.241 kb on - strand, within ECD_02659 at 2780.241 kb on - strand, within ECD_02659 at 2780.241 kb on - strand, within ECD_02659 at 2780.241 kb on - strand, within ECD_02659 at 2780.241 kb on - strand, within ECD_02659 at 2780.241 kb on - strand, within ECD_02659 at 2780.273 kb on - strand, within ECD_02659 at 2780.273 kb on - strand, within ECD_02659 at 2780.273 kb on - strand, within ECD_02659 at 2780.273 kb on - strand, within ECD_02659 at 2780.273 kb on - strand, within ECD_02659 at 2780.276 kb on - strand, within ECD_02659 at 2780.276 kb on - strand, within ECD_02659 at 2780.281 kb on - strand, within ECD_02659 at 2780.281 kb on - strand, within ECD_02659 at 2780.281 kb on - strand, within ECD_02659 at 2780.354 kb on - strand, within ECD_02659 at 2780.367 kb on - strand, within ECD_02659 at 2780.414 kb on - strand, within ECD_02659 at 2780.443 kb on - strand, within ECD_02659 at 2780.499 kb on + strand, within ECD_02659
Per-strain Table
Position Strand Gene LocusTag Fraction Bas48 remove 2,777,438 - ECD_02655 0.64 +0.4 2,777,452 - ECD_02655 0.67 -0.6 2,777,498 + ECD_02655 0.78 +0.7 2,777,499 - ECD_02655 0.78 -0.2 2,777,560 + +1.2 2,777,588 + -0.7 2,777,596 + -0.2 2,777,596 + -1.3 2,777,647 + -0.6 2,777,673 + -1.0 2,777,695 + +1.2 2,777,695 + -0.2 2,777,695 + -1.0 2,777,741 - ECD_02656 0.13 +1.1 2,777,812 + ECD_02656 0.22 -1.6 2,777,816 + ECD_02656 0.23 -1.4 2,777,816 + ECD_02656 0.23 -1.3 2,777,816 + ECD_02656 0.23 +1.3 2,777,816 + ECD_02656 0.23 -0.2 2,777,817 - ECD_02656 0.23 +1.7 2,777,817 - ECD_02656 0.23 +0.5 2,777,817 - ECD_02656 0.23 -2.2 2,777,818 + ECD_02656 0.23 -1.3 2,777,818 + ECD_02656 0.23 +0.7 2,777,819 - ECD_02656 0.23 +0.0 2,777,876 + ECD_02656 0.31 +0.0 2,777,943 + ECD_02656 0.40 +1.2 2,777,943 + ECD_02656 0.40 +1.0 2,777,966 + ECD_02656 0.43 -0.1 2,778,014 - ECD_02656 0.50 +0.9 2,778,092 + ECD_02656 0.61 -0.9 2,778,092 + ECD_02656 0.61 -0.2 2,778,093 - ECD_02656 0.61 -0.9 2,778,093 - ECD_02656 0.61 -0.1 2,778,101 + ECD_02656 0.62 +0.3 2,778,102 - ECD_02656 0.62 -2.0 2,778,102 - ECD_02656 0.62 -0.2 2,778,102 - ECD_02656 0.62 +0.2 2,778,102 - ECD_02656 0.62 -1.6 2,778,130 + ECD_02656 0.66 -0.2 2,778,131 - ECD_02656 0.66 -0.3 2,778,237 + ECD_02656 0.80 +0.9 2,778,271 + ECD_02656 0.85 -0.4 2,778,277 + ECD_02656 0.86 +0.6 2,778,324 + +0.0 2,778,334 + -1.8 2,778,334 + +1.2 2,778,334 + -0.3 2,778,334 + -0.6 2,778,500 - +0.5 2,778,500 - -0.2 2,778,528 + -0.1 2,778,529 - +0.2 2,778,529 - +0.1 2,778,529 - +0.0 2,778,558 - ECD_02657 0.12 -0.8 2,778,559 + ECD_02657 0.12 +1.3 2,778,559 + ECD_02657 0.12 +0.6 2,778,559 + ECD_02657 0.12 -0.8 2,778,559 + ECD_02657 0.12 -0.6 2,778,560 - ECD_02657 0.12 -1.9 2,778,560 - ECD_02657 0.12 -0.3 2,778,560 - ECD_02657 0.12 -0.3 2,778,560 - ECD_02657 0.12 -0.8 2,778,560 - ECD_02657 0.12 -0.7 2,778,699 + ECD_02657 0.25 +0.5 2,778,713 + ECD_02657 0.26 +0.8 2,778,714 - ECD_02657 0.26 +0.6 2,778,714 - ECD_02657 0.26 -1.4 2,778,714 - ECD_02657 0.26 +0.3 2,778,714 - ECD_02657 0.26 -1.3 2,778,714 - ECD_02657 0.26 -0.4 2,778,714 - ECD_02657 0.26 +0.0 2,778,714 - ECD_02657 0.26 -1.1 2,778,714 - ECD_02657 0.26 -2.1 2,778,815 - ECD_02657 0.36 -0.2 2,778,844 + ECD_02657 0.38 +0.5 2,778,845 - ECD_02657 0.38 -1.3 2,778,926 + ECD_02657 0.46 -2.0 2,778,927 - ECD_02657 0.46 -2.1 2,778,927 - ECD_02657 0.46 -0.3 2,778,927 - ECD_02657 0.46 -0.2 2,778,927 - ECD_02657 0.46 +2.4 2,778,927 - ECD_02657 0.46 -0.7 2,779,008 - ECD_02657 0.53 +1.2 2,779,008 - ECD_02657 0.53 -1.2 2,779,009 + ECD_02657 0.53 -0.7 2,779,009 + ECD_02657 0.53 -0.1 2,779,009 + ECD_02657 0.53 +0.0 2,779,009 + ECD_02657 0.53 -0.5 2,779,010 - ECD_02657 0.53 -0.3 2,779,010 - ECD_02657 0.53 -0.7 2,779,010 - ECD_02657 0.53 +2.3 2,779,010 - ECD_02657 0.53 -0.4 2,779,010 - ECD_02657 0.53 -0.3 2,779,010 - ECD_02657 0.53 -0.3 2,779,010 - ECD_02657 0.53 -0.9 2,779,010 - ECD_02657 0.53 +0.4 2,779,010 - ECD_02657 0.53 +0.6 2,779,010 - ECD_02657 0.53 -0.8 2,779,010 - ECD_02657 0.53 -0.8 2,779,034 - ECD_02657 0.55 -1.4 2,779,034 - ECD_02657 0.55 -1.6 2,779,034 - ECD_02657 0.55 -2.3 2,779,034 - ECD_02657 0.55 -3.0 2,779,039 + ECD_02657 0.56 +0.2 2,779,048 + ECD_02657 0.57 +0.8 2,779,048 + ECD_02657 0.57 +1.6 2,779,048 + ECD_02657 0.57 -0.7 2,779,049 - ECD_02657 0.57 -0.2 2,779,049 - ECD_02657 0.57 +0.4 2,779,068 - ECD_02657 0.59 +0.7 2,779,074 + ECD_02657 0.59 -0.5 2,779,074 + ECD_02657 0.59 +0.4 2,779,074 + ECD_02657 0.59 -0.7 2,779,075 - ECD_02657 0.59 +0.5 2,779,075 - ECD_02657 0.59 -0.7 2,779,075 - ECD_02657 0.59 -0.5 2,779,075 - ECD_02657 0.59 -0.7 2,779,075 - ECD_02657 0.59 -0.8 2,779,075 - ECD_02657 0.59 -0.1 2,779,075 - ECD_02657 0.59 +0.0 2,779,075 - ECD_02657 0.59 -0.6 2,779,075 - ECD_02657 0.59 +0.1 2,779,106 - ECD_02657 0.62 -0.2 2,779,234 - ECD_02657 0.74 -0.1 2,779,236 + ECD_02657 0.74 -0.6 2,779,236 + ECD_02657 0.74 +0.1 2,779,236 + ECD_02657 0.74 +0.9 2,779,268 + ECD_02657 0.77 -0.1 2,779,269 - ECD_02657 0.77 +1.0 2,779,269 - ECD_02657 0.77 -0.7 2,779,269 - ECD_02657 0.77 -0.7 2,779,360 - ECD_02657 0.85 -0.7 2,779,402 + ECD_02657 0.89 -0.6 2,779,402 + ECD_02657 0.89 +3.0 2,779,509 + -1.7 2,779,509 + -0.6 2,779,509 + +1.5 2,779,510 - +0.2 2,779,510 - -0.9 2,779,510 - +1.3 2,779,510 - +0.3 2,779,510 - -1.4 2,779,510 - -0.1 2,779,510 - -0.6 2,779,510 - +0.7 2,779,510 - -1.2 2,779,518 - -0.6 2,779,518 - +0.1 2,779,528 + +0.2 2,779,528 + -0.2 2,779,529 - +0.1 2,779,529 - +1.7 2,779,561 + ECD_02658 0.11 +0.6 2,779,562 - ECD_02658 0.12 -0.5 2,779,562 - ECD_02658 0.12 +0.6 2,779,562 - ECD_02658 0.12 +0.1 2,779,562 - ECD_02658 0.12 +0.1 2,779,562 - ECD_02658 0.12 +0.8 2,779,562 - ECD_02658 0.12 -0.1 2,779,562 - ECD_02658 0.12 -0.5 2,779,650 - ECD_02658 0.34 +1.3 2,779,695 + ECD_02658 0.45 +0.2 2,779,704 - ECD_02658 0.47 -1.0 2,779,748 - ECD_02658 0.59 +0.8 2,779,748 - ECD_02658 0.59 -0.1 2,779,748 - ECD_02658 0.59 +1.4 2,779,748 - ECD_02658 0.59 +0.8 2,779,748 - ECD_02658 0.59 +2.1 2,779,762 - ECD_02658 0.62 -0.3 2,779,775 + ECD_02658 0.65 -2.0 2,779,775 + ECD_02658 0.65 +0.0 2,779,776 - ECD_02658 0.66 +0.8 2,779,824 + ECD_02658 0.78 +0.6 2,779,825 - ECD_02658 0.78 +0.6 2,779,825 - ECD_02658 0.78 -0.9 2,779,825 - ECD_02658 0.78 -1.3 2,779,829 - ECD_02658 0.79 +1.4 2,779,829 - ECD_02658 0.79 -0.1 2,779,896 + +0.7 2,779,896 + -1.4 2,779,896 + +0.4 2,779,897 - +0.2 2,779,897 - +0.5 2,779,897 - +1.2 2,779,897 - -0.6 2,779,897 - +1.0 2,779,922 + -0.2 2,779,923 - -1.8 2,779,927 - +0.8 2,779,932 - -0.5 2,780,046 - ECD_02659 0.13 -3.6 2,780,046 - ECD_02659 0.13 +1.3 2,780,046 - ECD_02659 0.13 +0.4 2,780,128 - ECD_02659 0.22 -1.3 2,780,215 - ECD_02659 0.31 -0.6 2,780,215 - ECD_02659 0.31 -0.9 2,780,239 - ECD_02659 0.34 -1.3 2,780,239 - ECD_02659 0.34 -0.8 2,780,240 + ECD_02659 0.34 -0.4 2,780,240 + ECD_02659 0.34 -0.3 2,780,240 + ECD_02659 0.34 -2.3 2,780,240 + ECD_02659 0.34 -2.0 2,780,241 - ECD_02659 0.34 +0.2 2,780,241 - ECD_02659 0.34 -0.8 2,780,241 - ECD_02659 0.34 -1.0 2,780,241 - ECD_02659 0.34 -1.2 2,780,241 - ECD_02659 0.34 +1.3 2,780,241 - ECD_02659 0.34 -1.8 2,780,273 - ECD_02659 0.37 +0.8 2,780,273 - ECD_02659 0.37 -1.3 2,780,273 - ECD_02659 0.37 -0.3 2,780,273 - ECD_02659 0.37 -1.0 2,780,273 - ECD_02659 0.37 +0.0 2,780,276 - ECD_02659 0.38 -0.6 2,780,276 - ECD_02659 0.38 -1.7 2,780,281 - ECD_02659 0.38 -3.0 2,780,281 - ECD_02659 0.38 -1.2 2,780,281 - ECD_02659 0.38 -1.7 2,780,354 - ECD_02659 0.46 -2.7 2,780,367 - ECD_02659 0.48 -0.8 2,780,414 - ECD_02659 0.53 -1.8 2,780,443 - ECD_02659 0.56 +0.4 2,780,499 + ECD_02659 0.62 -2.3
Or see this region's nucleotide sequence