Strain Fitness in Escherichia coli BL21 around ECD_02478

Experiment: Bas48

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02476 and ECD_02477 are separated by 68 nucleotidesECD_02477 and ECD_02478 are separated by 31 nucleotidesECD_02478 and ECD_02479 are separated by 113 nucleotides ECD_02476: ECD_02476 - thioredoxin 2, at 2,585,335 to 2,585,754 _02476 ECD_02477: ECD_02477 - DTW domain protein, at 2,585,823 to 2,586,521 _02477 ECD_02478: ECD_02478 - protein lysine acetyltransferase, at 2,586,553 to 2,589,213 _02478 ECD_02479: ECD_02479 - phosphatidylserine synthase; CDP-diacylglycerol-serine O-phosphatidyltransferase, at 2,589,327 to 2,590,682 _02479 Position (kb) 2586 2587 2588 2589 2590Strain fitness (log2 ratio) -3 -2 -1 0 1at 2585.649 kb on + strand, within ECD_02476at 2585.649 kb on + strand, within ECD_02476at 2585.653 kb on - strand, within ECD_02476at 2585.752 kb on + strandat 2585.822 kb on + strandat 2585.960 kb on + strand, within ECD_02477at 2586.162 kb on + strand, within ECD_02477at 2586.221 kb on + strand, within ECD_02477at 2586.459 kb on + strandat 2586.508 kb on + strandat 2586.776 kb on + strandat 2586.776 kb on + strandat 2586.780 kb on + strandat 2586.780 kb on + strandat 2586.780 kb on + strandat 2586.780 kb on + strandat 2586.807 kb on + strandat 2586.904 kb on - strand, within ECD_02478at 2587.185 kb on - strand, within ECD_02478at 2587.185 kb on - strand, within ECD_02478at 2587.264 kb on - strand, within ECD_02478at 2587.564 kb on - strand, within ECD_02478at 2587.603 kb on + strand, within ECD_02478at 2587.604 kb on - strand, within ECD_02478at 2587.745 kb on - strand, within ECD_02478at 2587.745 kb on - strand, within ECD_02478at 2587.802 kb on + strand, within ECD_02478at 2587.828 kb on + strand, within ECD_02478at 2587.866 kb on + strand, within ECD_02478at 2588.082 kb on - strand, within ECD_02478at 2588.086 kb on - strand, within ECD_02478at 2588.086 kb on - strand, within ECD_02478at 2588.086 kb on - strand, within ECD_02478at 2588.086 kb on - strand, within ECD_02478at 2588.136 kb on + strand, within ECD_02478at 2588.174 kb on - strand, within ECD_02478at 2588.809 kb on + strand, within ECD_02478at 2588.838 kb on + strand, within ECD_02478at 2588.910 kb on + strand, within ECD_02478at 2588.910 kb on + strand, within ECD_02478at 2589.020 kb on + strandat 2589.020 kb on + strandat 2589.052 kb on + strandat 2589.072 kb on - strandat 2589.090 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas48
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2,585,649 + ECD_02476 0.75 -2.8
2,585,649 + ECD_02476 0.75 -0.0
2,585,653 - ECD_02476 0.76 +0.3
2,585,752 + -1.3
2,585,822 + +0.3
2,585,960 + ECD_02477 0.20 +0.7
2,586,162 + ECD_02477 0.48 -0.1
2,586,221 + ECD_02477 0.57 -0.0
2,586,459 + +0.1
2,586,508 + +0.4
2,586,776 + +0.7
2,586,776 + -0.2
2,586,780 + -0.7
2,586,780 + +0.3
2,586,780 + -0.9
2,586,780 + -0.4
2,586,807 + -0.5
2,586,904 - ECD_02478 0.13 -0.5
2,587,185 - ECD_02478 0.24 -0.0
2,587,185 - ECD_02478 0.24 +0.5
2,587,264 - ECD_02478 0.27 -1.5
2,587,564 - ECD_02478 0.38 +0.0
2,587,603 + ECD_02478 0.39 -0.4
2,587,604 - ECD_02478 0.39 -1.7
2,587,745 - ECD_02478 0.45 +0.0
2,587,745 - ECD_02478 0.45 -0.1
2,587,802 + ECD_02478 0.47 +0.3
2,587,828 + ECD_02478 0.48 -1.0
2,587,866 + ECD_02478 0.49 -0.4
2,588,082 - ECD_02478 0.57 +1.1
2,588,086 - ECD_02478 0.58 -1.0
2,588,086 - ECD_02478 0.58 +0.6
2,588,086 - ECD_02478 0.58 -0.5
2,588,086 - ECD_02478 0.58 -0.1
2,588,136 + ECD_02478 0.59 -0.4
2,588,174 - ECD_02478 0.61 -0.5
2,588,809 + ECD_02478 0.85 -0.4
2,588,838 + ECD_02478 0.86 +0.4
2,588,910 + ECD_02478 0.89 -0.2
2,588,910 + ECD_02478 0.89 -0.1
2,589,020 + +0.1
2,589,020 + +0.5
2,589,052 + +0.1
2,589,072 - +1.2
2,589,090 + +0.6

Or see this region's nucleotide sequence