Experiment: Bas48
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02308 and ECD_02309 are separated by 89 nucleotides ECD_02309 and ECD_02310 overlap by 4 nucleotides ECD_02310 and ECD_02311 are separated by 1 nucleotides
ECD_02308: ECD_02308 - transcriptional regulator of yefH, at 2,398,317 to 2,399,243
_02308
ECD_02309: ECD_02309 - putative inorganic ion transporter, at 2,399,333 to 2,400,331
_02309
ECD_02310: ECD_02310 - DUF3820 family protein, at 2,400,328 to 2,400,546
_02310
ECD_02311: ECD_02311 - DNA ligase, NAD(+)-dependent, at 2,400,548 to 2,402,563
_02311
Position (kb)
2399
2400
2401 Strain fitness (log2 ratio)
-1
0
1 at 2398.473 kb on + strand, within ECD_02308 at 2398.523 kb on + strand, within ECD_02308 at 2398.699 kb on + strand, within ECD_02308 at 2398.700 kb on - strand, within ECD_02308 at 2398.700 kb on - strand, within ECD_02308 at 2398.700 kb on - strand, within ECD_02308 at 2398.880 kb on + strand, within ECD_02308 at 2398.881 kb on - strand, within ECD_02308 at 2399.306 kb on + strand at 2399.473 kb on + strand, within ECD_02309 at 2399.643 kb on - strand, within ECD_02309 at 2399.957 kb on + strand, within ECD_02309 at 2399.959 kb on + strand, within ECD_02309 at 2400.067 kb on - strand, within ECD_02309 at 2400.071 kb on - strand, within ECD_02309 at 2400.294 kb on + strand at 2400.401 kb on - strand, within ECD_02310 at 2400.456 kb on - strand, within ECD_02310
Per-strain Table
Position Strand Gene LocusTag Fraction Bas48 remove 2,398,473 + ECD_02308 0.17 -0.1 2,398,523 + ECD_02308 0.22 -0.7 2,398,699 + ECD_02308 0.41 +1.2 2,398,700 - ECD_02308 0.41 -0.7 2,398,700 - ECD_02308 0.41 +1.1 2,398,700 - ECD_02308 0.41 +1.3 2,398,880 + ECD_02308 0.61 +1.1 2,398,881 - ECD_02308 0.61 +0.2 2,399,306 + -0.9 2,399,473 + ECD_02309 0.14 -0.9 2,399,643 - ECD_02309 0.31 -0.1 2,399,957 + ECD_02309 0.62 -0.2 2,399,959 + ECD_02309 0.63 -0.0 2,400,067 - ECD_02309 0.73 -1.5 2,400,071 - ECD_02309 0.74 +0.1 2,400,294 + -0.2 2,400,401 - ECD_02310 0.33 -0.2 2,400,456 - ECD_02310 0.58 -0.2
Or see this region's nucleotide sequence