Experiment: Bas48
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02240 and ECD_02241 are separated by 69 nucleotides ECD_02241 and ECD_02242 are separated by 155 nucleotides ECD_02242 and ECD_02243 are separated by 82 nucleotides
ECD_02240: ECD_02240 - bifunctional folylpolyglutamate synthase/ dihydrofolate synthase, at 2,318,927 to 2,320,195
_02240
ECD_02241: ECD_02241 - acetyl-CoA carboxylase, beta (carboxyltransferase) subunit, at 2,320,265 to 2,321,179
_02241
ECD_02242: ECD_02242 - DedA family inner membrane protein, at 2,321,335 to 2,321,994
_02242
ECD_02243: ECD_02243 - tRNA pseudouridine(38-40) synthase, at 2,322,077 to 2,322,889
_02243
Position (kb)
2320
2321
2322 Strain fitness (log2 ratio)
-1
0
1 at 2320.264 kb on - strand at 2320.305 kb on - strand at 2321.410 kb on - strand, within ECD_02242 at 2321.431 kb on - strand, within ECD_02242 at 2321.518 kb on - strand, within ECD_02242 at 2321.520 kb on - strand, within ECD_02242 at 2321.779 kb on - strand, within ECD_02242 at 2321.779 kb on - strand, within ECD_02242 at 2322.012 kb on - strand at 2322.032 kb on + strand at 2322.033 kb on - strand at 2322.070 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas48 remove 2,320,264 - +1.0 2,320,305 - +0.7 2,321,410 - ECD_02242 0.11 -0.2 2,321,431 - ECD_02242 0.15 +0.4 2,321,518 - ECD_02242 0.28 +1.3 2,321,520 - ECD_02242 0.28 -1.2 2,321,779 - ECD_02242 0.67 +0.8 2,321,779 - ECD_02242 0.67 -0.6 2,322,012 - -0.1 2,322,032 + +1.0 2,322,033 - -0.2 2,322,070 - -0.5
Or see this region's nucleotide sequence