Strain Fitness in Escherichia coli BL21 around ECD_01570

Experiment: Bas48

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01568 and ECD_01569 overlap by 14 nucleotidesECD_01569 and ECD_01570 are separated by 411 nucleotidesECD_01570 and ECD_01571 are separated by 24 nucleotides ECD_01568: ECD_01568 - multidrug efflux system transporter, at 1,618,017 to 1,618,346 _01568 ECD_01569: ECD_01569 - multidrug efflux system transporter, at 1,618,333 to 1,618,698 _01569 ECD_01570: ECD_01570 - pheromone AI-2 transporter, at 1,619,110 to 1,620,144 _01570 ECD_01571: ECD_01571 - pyridine nucleotide transhydrogenase, beta subunit, at 1,620,169 to 1,621,557 _01571 Position (kb) 1619 1620 1621Strain fitness (log2 ratio) -1 0 1at 1619.589 kb on + strand, within ECD_01570at 1620.496 kb on - strand, within ECD_01571at 1620.496 kb on - strand, within ECD_01571at 1620.784 kb on - strand, within ECD_01571at 1620.784 kb on - strand, within ECD_01571at 1620.856 kb on - strand, within ECD_01571

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas48
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1,619,589 + ECD_01570 0.46 -0.8
1,620,496 - ECD_01571 0.24 +0.8
1,620,496 - ECD_01571 0.24 -0.1
1,620,784 - ECD_01571 0.44 +1.4
1,620,784 - ECD_01571 0.44 -1.2
1,620,856 - ECD_01571 0.49 +1.0

Or see this region's nucleotide sequence