Experiment: Bas48
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01109 and ECD_01110 are separated by 143 nucleotides ECD_01110 and ECD_01111 are separated by 127 nucleotides
ECD_01109: ECD_01109 - L,D-transpeptidase linking Lpp to murein, at 1,172,005 to 1,172,967
_01109
ECD_01110: ECD_01110 - transcription-repair coupling factor, at 1,173,111 to 1,176,557
_01110
ECD_01111: ECD_01111 - inner membrane protein, at 1,176,685 to 1,177,758
_01111
Position (kb)
1173
1174
1175
1176
1177 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1172.570 kb on - strand, within ECD_01109 at 1172.624 kb on + strand, within ECD_01109 at 1172.627 kb on + strand, within ECD_01109 at 1172.627 kb on + strand, within ECD_01109 at 1173.471 kb on - strand, within ECD_01110 at 1173.633 kb on - strand, within ECD_01110 at 1173.634 kb on + strand, within ECD_01110 at 1173.635 kb on - strand, within ECD_01110 at 1173.635 kb on - strand, within ECD_01110 at 1173.635 kb on - strand, within ECD_01110 at 1173.635 kb on - strand, within ECD_01110 at 1174.118 kb on - strand, within ECD_01110 at 1174.121 kb on - strand, within ECD_01110 at 1174.274 kb on + strand, within ECD_01110 at 1174.390 kb on - strand, within ECD_01110 at 1174.587 kb on - strand, within ECD_01110 at 1174.790 kb on - strand, within ECD_01110 at 1174.999 kb on + strand, within ECD_01110 at 1175.721 kb on - strand, within ECD_01110 at 1175.734 kb on + strand, within ECD_01110 at 1175.829 kb on - strand, within ECD_01110 at 1176.225 kb on - strand at 1176.272 kb on - strand at 1176.584 kb on - strand at 1176.606 kb on - strand at 1176.614 kb on + strand at 1176.787 kb on - strand at 1176.917 kb on + strand, within ECD_01111 at 1176.918 kb on - strand, within ECD_01111 at 1177.045 kb on - strand, within ECD_01111 at 1177.322 kb on + strand, within ECD_01111
Per-strain Table
Position Strand Gene LocusTag Fraction Bas48 remove 1,172,570 - ECD_01109 0.59 +1.2 1,172,624 + ECD_01109 0.64 -1.9 1,172,627 + ECD_01109 0.65 +0.9 1,172,627 + ECD_01109 0.65 +1.8 1,173,471 - ECD_01110 0.10 -0.1 1,173,633 - ECD_01110 0.15 -0.6 1,173,634 + ECD_01110 0.15 +1.2 1,173,635 - ECD_01110 0.15 +0.9 1,173,635 - ECD_01110 0.15 -0.6 1,173,635 - ECD_01110 0.15 -1.2 1,173,635 - ECD_01110 0.15 +1.2 1,174,118 - ECD_01110 0.29 -2.2 1,174,121 - ECD_01110 0.29 -0.3 1,174,274 + ECD_01110 0.34 +0.3 1,174,390 - ECD_01110 0.37 -0.8 1,174,587 - ECD_01110 0.43 +2.3 1,174,790 - ECD_01110 0.49 +1.3 1,174,999 + ECD_01110 0.55 +1.3 1,175,721 - ECD_01110 0.76 +2.1 1,175,734 + ECD_01110 0.76 -0.2 1,175,829 - ECD_01110 0.79 -0.2 1,176,225 - -0.5 1,176,272 - +0.7 1,176,584 - -0.8 1,176,606 - +0.2 1,176,614 + -0.6 1,176,787 - -0.1 1,176,917 + ECD_01111 0.22 -1.0 1,176,918 - ECD_01111 0.22 -1.1 1,177,045 - ECD_01111 0.34 -0.1 1,177,322 + ECD_01111 0.59 +0.8
Or see this region's nucleotide sequence