Strain Fitness in Escherichia coli BL21 around ECD_00260

Experiment: Bas48

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00258 and ECD_00259 are separated by 11 nucleotidesECD_00259 and ECD_00260 are separated by 108 nucleotidesECD_00260 and ECD_00261 are separated by 225 nucleotides ECD_00258: ECD_00258 - reactive chlorine species (RCS) stress resistance inner membrane protein, at 287,354 to 287,947 _00258 ECD_00259: ECD_00259 - reactive chlorine species (RCS) stress resistance periplasmic protein, at 287,959 to 288,195 _00259 ECD_00260: ECD_00260 - reactive chlorine stress species (RCS) resistance protein; pyridine nucleotide-dependent disulfide oxidoreductase family, at 288,304 to 289,629 _00260 ECD_00261: ECD_00261 - reactive chlorine species (RCS)-specific activator of the rcl genes, at 289,855 to 290,709 _00261 Position (kb) 288 289 290Strain fitness (log2 ratio) -1 0 1 2 3at 288.377 kb on - strandat 288.465 kb on + strand, within ECD_00260at 288.630 kb on + strand, within ECD_00260at 288.635 kb on - strand, within ECD_00260at 288.791 kb on - strand, within ECD_00260at 288.889 kb on + strand, within ECD_00260at 289.514 kb on + strandat 289.922 kb on + strandat 290.037 kb on - strand, within ECD_00261at 290.212 kb on + strand, within ECD_00261at 290.349 kb on + strand, within ECD_00261at 290.402 kb on + strand, within ECD_00261at 290.402 kb on + strand, within ECD_00261

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas48
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288,377 - +2.1
288,465 + ECD_00260 0.12 +0.3
288,630 + ECD_00260 0.25 +1.7
288,635 - ECD_00260 0.25 +0.2
288,791 - ECD_00260 0.37 +3.2
288,889 + ECD_00260 0.44 +1.2
289,514 + -0.0
289,922 + +1.1
290,037 - ECD_00261 0.21 -0.1
290,212 + ECD_00261 0.42 -0.2
290,349 + ECD_00261 0.58 +0.7
290,402 + ECD_00261 0.64 +0.5
290,402 + ECD_00261 0.64 +0.2

Or see this region's nucleotide sequence