Strain Fitness in Escherichia coli BL21 around ECD_00069

Experiment: Bas48

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00067 and ECD_00068 are separated by 113 nucleotidesECD_00068 and ECD_00069 overlap by 17 nucleotidesECD_00069 and ECD_00070 overlap by 25 nucleotides ECD_00067: ECD_00067 - DedA family inner membrane protein, at 74,156 to 74,920 _00067 ECD_00068: ECD_00068 - thiamine/thiamine pyrophosphate ABC transporter ATPase, at 75,034 to 75,732 _00068 ECD_00069: ECD_00069 - thiamine/thiamine pyrophosphate ABC transporter permease, at 75,716 to 77,326 _00069 ECD_00070: ECD_00070 - thiamine/thiamine pyrophosphate/thiamine monophosphate ABC transporter periplasmic binding protein, at 77,302 to 78,285 _00070 Position (kb) 75 76 77 78Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 74.786 kb on + strand, within ECD_00067at 74.787 kb on - strand, within ECD_00067at 74.787 kb on - strand, within ECD_00067at 74.885 kb on + strandat 74.885 kb on + strandat 74.885 kb on + strandat 74.885 kb on + strandat 74.885 kb on + strandat 74.885 kb on + strandat 74.885 kb on + strandat 74.886 kb on - strandat 74.894 kb on - strandat 74.967 kb on - strandat 74.967 kb on - strandat 75.032 kb on + strandat 75.032 kb on + strandat 75.032 kb on + strandat 75.033 kb on - strandat 75.033 kb on - strandat 75.033 kb on - strandat 75.036 kb on - strandat 75.372 kb on + strand, within ECD_00068at 75.714 kb on + strandat 75.714 kb on + strandat 75.841 kb on - strandat 75.978 kb on - strand, within ECD_00069at 76.018 kb on + strand, within ECD_00069at 76.018 kb on + strand, within ECD_00069at 76.018 kb on + strand, within ECD_00069at 76.018 kb on + strand, within ECD_00069at 76.019 kb on - strand, within ECD_00069at 76.019 kb on - strand, within ECD_00069at 76.019 kb on - strand, within ECD_00069at 76.019 kb on - strand, within ECD_00069at 76.019 kb on - strand, within ECD_00069at 76.019 kb on - strand, within ECD_00069at 76.019 kb on - strand, within ECD_00069at 76.019 kb on - strand, within ECD_00069at 76.298 kb on + strand, within ECD_00069at 76.298 kb on + strand, within ECD_00069at 76.298 kb on + strand, within ECD_00069at 76.299 kb on - strand, within ECD_00069at 76.299 kb on - strand, within ECD_00069at 76.386 kb on - strand, within ECD_00069at 76.445 kb on + strand, within ECD_00069at 76.446 kb on - strand, within ECD_00069at 76.615 kb on - strand, within ECD_00069at 76.621 kb on - strand, within ECD_00069at 76.635 kb on + strand, within ECD_00069at 76.636 kb on - strand, within ECD_00069at 76.720 kb on + strand, within ECD_00069at 76.721 kb on - strand, within ECD_00069at 76.721 kb on - strand, within ECD_00069at 76.721 kb on - strand, within ECD_00069at 76.857 kb on - strand, within ECD_00069at 76.857 kb on - strand, within ECD_00069at 76.903 kb on + strand, within ECD_00069at 76.984 kb on - strand, within ECD_00069at 76.984 kb on - strand, within ECD_00069at 77.028 kb on - strand, within ECD_00069at 77.083 kb on - strand, within ECD_00069at 77.083 kb on - strand, within ECD_00069at 77.175 kb on + strandat 77.175 kb on + strandat 77.175 kb on + strandat 77.176 kb on - strandat 77.176 kb on - strandat 77.276 kb on + strandat 77.277 kb on - strandat 77.288 kb on + strandat 77.490 kb on + strand, within ECD_00070at 77.594 kb on + strand, within ECD_00070at 77.595 kb on - strand, within ECD_00070at 77.599 kb on - strand, within ECD_00070at 77.599 kb on - strand, within ECD_00070at 77.625 kb on - strand, within ECD_00070at 77.642 kb on + strand, within ECD_00070at 77.643 kb on - strand, within ECD_00070at 77.651 kb on - strand, within ECD_00070at 77.780 kb on - strand, within ECD_00070at 77.802 kb on + strand, within ECD_00070at 77.803 kb on - strand, within ECD_00070at 77.916 kb on - strand, within ECD_00070at 77.916 kb on - strand, within ECD_00070at 77.946 kb on + strand, within ECD_00070at 78.142 kb on - strand, within ECD_00070at 78.142 kb on - strand, within ECD_00070at 78.142 kb on - strand, within ECD_00070at 78.142 kb on - strand, within ECD_00070at 78.206 kb on + strandat 78.207 kb on - strandat 78.210 kb on + strandat 78.210 kb on + strandat 78.211 kb on - strandat 78.211 kb on - strandat 78.212 kb on + strandat 78.212 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas48
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74,786 + ECD_00067 0.82 +2.1
74,787 - ECD_00067 0.82 +0.6
74,787 - ECD_00067 0.82 -0.0
74,885 + -0.4
74,885 + -0.5
74,885 + +0.2
74,885 + +0.2
74,885 + -0.7
74,885 + +0.2
74,885 + -0.2
74,886 - -3.0
74,894 - -0.1
74,967 - -0.2
74,967 - +0.8
75,032 + +1.0
75,032 + -0.7
75,032 + +0.3
75,033 - -0.1
75,033 - +1.0
75,033 - -0.1
75,036 - -0.4
75,372 + ECD_00068 0.48 +0.8
75,714 + +1.0
75,714 + +0.0
75,841 - -0.1
75,978 - ECD_00069 0.16 -0.3
76,018 + ECD_00069 0.19 -0.7
76,018 + ECD_00069 0.19 +0.3
76,018 + ECD_00069 0.19 -0.5
76,018 + ECD_00069 0.19 +0.6
76,019 - ECD_00069 0.19 +0.3
76,019 - ECD_00069 0.19 +0.6
76,019 - ECD_00069 0.19 -0.0
76,019 - ECD_00069 0.19 +0.2
76,019 - ECD_00069 0.19 -0.9
76,019 - ECD_00069 0.19 +0.6
76,019 - ECD_00069 0.19 +0.2
76,019 - ECD_00069 0.19 +0.5
76,298 + ECD_00069 0.36 +1.2
76,298 + ECD_00069 0.36 +0.6
76,298 + ECD_00069 0.36 -0.4
76,299 - ECD_00069 0.36 +0.8
76,299 - ECD_00069 0.36 -0.1
76,386 - ECD_00069 0.42 +1.8
76,445 + ECD_00069 0.45 -0.1
76,446 - ECD_00069 0.45 +0.5
76,615 - ECD_00069 0.56 +0.1
76,621 - ECD_00069 0.56 +0.7
76,635 + ECD_00069 0.57 +0.1
76,636 - ECD_00069 0.57 +0.2
76,720 + ECD_00069 0.62 +0.5
76,721 - ECD_00069 0.62 +1.0
76,721 - ECD_00069 0.62 +1.8
76,721 - ECD_00069 0.62 -0.4
76,857 - ECD_00069 0.71 +0.2
76,857 - ECD_00069 0.71 +0.8
76,903 + ECD_00069 0.74 -0.4
76,984 - ECD_00069 0.79 +1.0
76,984 - ECD_00069 0.79 -0.1
77,028 - ECD_00069 0.81 +1.3
77,083 - ECD_00069 0.85 +0.4
77,083 - ECD_00069 0.85 +0.7
77,175 + -0.0
77,175 + +0.3
77,175 + -1.5
77,176 - +0.3
77,176 - -0.3
77,276 + -1.4
77,277 - +0.1
77,288 + -1.1
77,490 + ECD_00070 0.19 -0.2
77,594 + ECD_00070 0.30 -0.5
77,595 - ECD_00070 0.30 -0.1
77,599 - ECD_00070 0.30 +0.0
77,599 - ECD_00070 0.30 +3.0
77,625 - ECD_00070 0.33 +0.4
77,642 + ECD_00070 0.35 -0.2
77,643 - ECD_00070 0.35 +0.2
77,651 - ECD_00070 0.35 -0.3
77,780 - ECD_00070 0.49 -0.7
77,802 + ECD_00070 0.51 +0.0
77,803 - ECD_00070 0.51 +0.4
77,916 - ECD_00070 0.62 +1.1
77,916 - ECD_00070 0.62 +0.1
77,946 + ECD_00070 0.65 -1.0
78,142 - ECD_00070 0.85 +0.3
78,142 - ECD_00070 0.85 +0.6
78,142 - ECD_00070 0.85 +0.0
78,142 - ECD_00070 0.85 +0.6
78,206 + +0.2
78,207 - +0.6
78,210 + -0.4
78,210 + +0.0
78,211 - +0.8
78,211 - +1.2
78,212 + -0.1
78,212 + +0.0

Or see this region's nucleotide sequence