Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS26110

Experiment: MJM9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS26095 and LU632_RS26100 are separated by 7 nucleotidesLU632_RS26100 and LU632_RS26105 are separated by 16 nucleotidesLU632_RS26105 and LU632_RS26110 are separated by 444 nucleotidesLU632_RS26110 and LU632_RS26115 overlap by 4 nucleotidesLU632_RS26115 and LU632_RS26120 are separated by 134 nucleotidesLU632_RS26120 and LU632_RS26125 overlap by 7 nucleotidesLU632_RS26125 and LU632_RS26130 are separated by 93 nucleotides LU632_RS26095: LU632_RS26095 - lysozyme, at 25,610 to 26,035 _RS26095 LU632_RS26100: LU632_RS26100 - phage holin family protein, at 26,043 to 26,345 _RS26100 LU632_RS26105: LU632_RS26105 - hypothetical protein, at 26,362 to 26,520 _RS26105 LU632_RS26110: LU632_RS26110 - ParA family protein, at 26,965 to 27,588 _RS26110 LU632_RS26115: LU632_RS26115 - hypothetical protein, at 27,585 to 27,812 _RS26115 LU632_RS26120: LU632_RS26120 - WGR domain-containing protein, at 27,947 to 28,162 _RS26120 LU632_RS26125: LU632_RS26125 - DUF551 domain-containing protein, at 28,156 to 28,341 _RS26125 LU632_RS26130: LU632_RS26130 - hypothetical protein, at 28,435 to 28,794 _RS26130 Position (kb) 26 27 28Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 25.971 kb on + strand, within LU632_RS26095at 25.972 kb on - strand, within LU632_RS26095at 25.972 kb on - strand, within LU632_RS26095at 26.044 kb on + strandat 26.048 kb on + strandat 26.048 kb on + strandat 26.048 kb on + strandat 26.048 kb on + strandat 26.048 kb on + strandat 26.048 kb on + strandat 26.048 kb on + strandat 26.049 kb on - strandat 26.049 kb on - strandat 26.049 kb on - strandat 26.049 kb on - strandat 26.049 kb on - strandat 26.049 kb on - strandat 26.049 kb on - strandat 26.049 kb on - strandat 26.049 kb on - strandat 26.097 kb on - strand, within LU632_RS26100at 26.097 kb on - strand, within LU632_RS26100at 26.308 kb on - strand, within LU632_RS26100at 26.367 kb on + strandat 26.367 kb on + strandat 26.525 kb on + strandat 26.658 kb on + strandat 26.698 kb on + strandat 26.698 kb on + strandat 26.699 kb on - strandat 26.863 kb on + strandat 26.898 kb on + strandat 27.003 kb on + strandat 27.004 kb on - strandat 27.015 kb on - strandat 27.134 kb on + strand, within LU632_RS26110at 27.135 kb on - strand, within LU632_RS26110at 27.135 kb on - strand, within LU632_RS26110at 27.215 kb on + strand, within LU632_RS26110at 27.215 kb on + strand, within LU632_RS26110at 27.215 kb on + strand, within LU632_RS26110at 27.215 kb on + strand, within LU632_RS26110at 27.215 kb on + strand, within LU632_RS26110at 27.216 kb on - strand, within LU632_RS26110at 27.216 kb on - strand, within LU632_RS26110at 27.216 kb on - strand, within LU632_RS26110at 27.216 kb on - strand, within LU632_RS26110at 27.216 kb on - strand, within LU632_RS26110at 27.477 kb on + strand, within LU632_RS26110at 27.477 kb on + strand, within LU632_RS26110at 27.478 kb on - strand, within LU632_RS26110at 27.478 kb on - strand, within LU632_RS26110at 27.478 kb on - strand, within LU632_RS26110at 27.478 kb on - strand, within LU632_RS26110at 27.478 kb on - strand, within LU632_RS26110at 27.478 kb on - strand, within LU632_RS26110at 27.478 kb on - strand, within LU632_RS26110at 27.521 kb on - strand, within LU632_RS26110at 27.928 kb on - strandat 27.935 kb on + strandat 27.936 kb on - strandat 27.946 kb on + strandat 27.947 kb on - strandat 27.947 kb on - strandat 27.968 kb on - strandat 27.977 kb on + strand, within LU632_RS26120at 28.032 kb on - strand, within LU632_RS26120at 28.159 kb on + strandat 28.160 kb on + strandat 28.160 kb on + strandat 28.161 kb on - strandat 28.161 kb on - strandat 28.161 kb on - strandat 28.198 kb on - strand, within LU632_RS26125at 28.204 kb on + strand, within LU632_RS26125at 28.204 kb on + strand, within LU632_RS26125at 28.204 kb on + strand, within LU632_RS26125at 28.204 kb on + strand, within LU632_RS26125at 28.205 kb on - strand, within LU632_RS26125at 28.205 kb on - strand, within LU632_RS26125at 28.205 kb on - strand, within LU632_RS26125at 28.205 kb on - strand, within LU632_RS26125at 28.205 kb on - strand, within LU632_RS26125at 28.205 kb on - strand, within LU632_RS26125at 28.262 kb on + strand, within LU632_RS26125at 28.263 kb on - strand, within LU632_RS26125at 28.303 kb on - strand, within LU632_RS26125at 28.546 kb on + strand, within LU632_RS26130at 28.546 kb on + strand, within LU632_RS26130at 28.546 kb on + strand, within LU632_RS26130at 28.547 kb on - strand, within LU632_RS26130at 28.547 kb on - strand, within LU632_RS26130at 28.547 kb on - strand, within LU632_RS26130at 28.547 kb on - strand, within LU632_RS26130at 28.547 kb on - strand, within LU632_RS26130at 28.547 kb on - strand, within LU632_RS26130at 28.547 kb on - strand, within LU632_RS26130at 28.548 kb on + strand, within LU632_RS26130at 28.548 kb on + strand, within LU632_RS26130at 28.548 kb on + strand, within LU632_RS26130at 28.548 kb on + strand, within LU632_RS26130at 28.548 kb on + strand, within LU632_RS26130at 28.549 kb on - strand, within LU632_RS26130at 28.549 kb on - strand, within LU632_RS26130at 28.549 kb on - strand, within LU632_RS26130at 28.549 kb on - strand, within LU632_RS26130at 28.549 kb on - strand, within LU632_RS26130at 28.549 kb on - strand, within LU632_RS26130at 28.549 kb on - strand, within LU632_RS26130at 28.549 kb on - strand, within LU632_RS26130at 28.549 kb on - strand, within LU632_RS26130

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Per-strain Table

Position Strand Gene LocusTag Fraction MJM9
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25,971 + LU632_RS26095 0.85 -0.1
25,972 - LU632_RS26095 0.85 -1.8
25,972 - LU632_RS26095 0.85 -0.3
26,044 + +0.8
26,048 + -0.7
26,048 + -0.5
26,048 + +0.4
26,048 + +0.8
26,048 + -0.2
26,048 + -1.2
26,048 + -0.6
26,049 - +1.2
26,049 - -0.2
26,049 - -0.2
26,049 - -0.4
26,049 - -0.6
26,049 - -2.8
26,049 - -0.8
26,049 - -0.2
26,049 - -0.8
26,097 - LU632_RS26100 0.18 -0.3
26,097 - LU632_RS26100 0.18 -0.9
26,308 - LU632_RS26100 0.87 +0.2
26,367 + -0.5
26,367 + +0.4
26,525 + +2.1
26,658 + -0.1
26,698 + +0.1
26,698 + -0.3
26,699 - -0.2
26,863 + -0.9
26,898 + -0.2
27,003 + -0.2
27,004 - -2.1
27,015 - -0.2
27,134 + LU632_RS26110 0.27 -0.8
27,135 - LU632_RS26110 0.27 -2.9
27,135 - LU632_RS26110 0.27 -0.3
27,215 + LU632_RS26110 0.40 -1.3
27,215 + LU632_RS26110 0.40 -1.7
27,215 + LU632_RS26110 0.40 -0.2
27,215 + LU632_RS26110 0.40 -1.2
27,215 + LU632_RS26110 0.40 -0.2
27,216 - LU632_RS26110 0.40 -1.2
27,216 - LU632_RS26110 0.40 -0.3
27,216 - LU632_RS26110 0.40 -0.2
27,216 - LU632_RS26110 0.40 -0.2
27,216 - LU632_RS26110 0.40 -2.2
27,477 + LU632_RS26110 0.82 -3.0
27,477 + LU632_RS26110 0.82 -0.9
27,478 - LU632_RS26110 0.82 -1.0
27,478 - LU632_RS26110 0.82 -1.6
27,478 - LU632_RS26110 0.82 -0.2
27,478 - LU632_RS26110 0.82 -0.5
27,478 - LU632_RS26110 0.82 -1.9
27,478 - LU632_RS26110 0.82 -0.2
27,478 - LU632_RS26110 0.82 +0.8
27,521 - LU632_RS26110 0.89 -3.0
27,928 - -0.4
27,935 + -0.6
27,936 - -0.3
27,946 + +0.4
27,947 - -0.2
27,947 - +0.4
27,968 - -0.3
27,977 + LU632_RS26120 0.14 +0.2
28,032 - LU632_RS26120 0.39 -0.2
28,159 + -0.6
28,160 + +0.4
28,160 + +0.1
28,161 - +0.5
28,161 - -0.2
28,161 - +0.6
28,198 - LU632_RS26125 0.23 -0.2
28,204 + LU632_RS26125 0.26 -0.2
28,204 + LU632_RS26125 0.26 -0.5
28,204 + LU632_RS26125 0.26 +0.1
28,204 + LU632_RS26125 0.26 +0.2
28,205 - LU632_RS26125 0.26 +0.2
28,205 - LU632_RS26125 0.26 -1.2
28,205 - LU632_RS26125 0.26 -0.0
28,205 - LU632_RS26125 0.26 +2.1
28,205 - LU632_RS26125 0.26 -0.0
28,205 - LU632_RS26125 0.26 -0.6
28,262 + LU632_RS26125 0.57 -0.5
28,263 - LU632_RS26125 0.58 +0.1
28,303 - LU632_RS26125 0.79 +0.6
28,546 + LU632_RS26130 0.31 +0.5
28,546 + LU632_RS26130 0.31 -0.4
28,546 + LU632_RS26130 0.31 +0.3
28,547 - LU632_RS26130 0.31 +0.5
28,547 - LU632_RS26130 0.31 +0.1
28,547 - LU632_RS26130 0.31 -0.1
28,547 - LU632_RS26130 0.31 +0.1
28,547 - LU632_RS26130 0.31 +0.4
28,547 - LU632_RS26130 0.31 -0.2
28,547 - LU632_RS26130 0.31 -0.3
28,548 + LU632_RS26130 0.31 +0.8
28,548 + LU632_RS26130 0.31 -0.2
28,548 + LU632_RS26130 0.31 -0.0
28,548 + LU632_RS26130 0.31 +0.8
28,548 + LU632_RS26130 0.31 +0.4
28,549 - LU632_RS26130 0.32 -0.2
28,549 - LU632_RS26130 0.32 +0.4
28,549 - LU632_RS26130 0.32 +0.1
28,549 - LU632_RS26130 0.32 -0.4
28,549 - LU632_RS26130 0.32 -0.2
28,549 - LU632_RS26130 0.32 -0.9
28,549 - LU632_RS26130 0.32 +0.0
28,549 - LU632_RS26130 0.32 -0.2
28,549 - LU632_RS26130 0.32 -0.5

Or see this region's nucleotide sequence