Experiment: MJM9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS25145 and LU632_RS25150 are separated by 9 nucleotides LU632_RS25150 and LU632_RS25155 are separated by 9 nucleotides LU632_RS25155 and LU632_RS25160 are separated by 129 nucleotides
LU632_RS25145: LU632_RS25145 - phage tail sheath subtilisin-like domain-containing protein, at 4,784,869 to 4,786,383
_RS25145
LU632_RS25150: LU632_RS25150 - phage tail tube protein, at 4,786,393 to 4,786,749
_RS25150
LU632_RS25155: LU632_RS25155 - phage tail assembly protein, at 4,786,759 to 4,787,214
_RS25155
LU632_RS25160: LU632_RS25160 - tape measure protein, at 4,787,344 to 4,789,179
_RS25160
Position (kb) 4786
4787 Strain fitness (log2 ratio) -1
0
1 at 4785.473 kb on - strand, within LU632_RS25145 at 4785.475 kb on + strand, within LU632_RS25145 at 4785.520 kb on + strand, within LU632_RS25145 at 4785.592 kb on + strand, within LU632_RS25145 at 4785.593 kb on - strand, within LU632_RS25145 at 4785.593 kb on - strand, within LU632_RS25145 at 4785.628 kb on - strand, within LU632_RS25145 at 4785.669 kb on + strand, within LU632_RS25145 at 4785.669 kb on + strand, within LU632_RS25145 at 4785.796 kb on + strand, within LU632_RS25145 at 4785.796 kb on + strand, within LU632_RS25145 at 4785.797 kb on - strand, within LU632_RS25145 at 4785.797 kb on - strand, within LU632_RS25145 at 4785.797 kb on - strand, within LU632_RS25145 at 4785.987 kb on - strand, within LU632_RS25145 at 4786.048 kb on + strand, within LU632_RS25145 at 4786.132 kb on - strand, within LU632_RS25145 at 4786.276 kb on + strand at 4786.277 kb on - strand at 4786.277 kb on - strand at 4786.277 kb on - strand at 4786.336 kb on - strand at 4786.429 kb on + strand, within LU632_RS25150 at 4786.429 kb on + strand, within LU632_RS25150 at 4786.430 kb on - strand, within LU632_RS25150 at 4786.430 kb on - strand, within LU632_RS25150 at 4786.527 kb on + strand, within LU632_RS25150 at 4786.527 kb on + strand, within LU632_RS25150 at 4786.528 kb on - strand, within LU632_RS25150 at 4786.740 kb on + strand at 4786.740 kb on + strand at 4786.741 kb on - strand at 4786.779 kb on + strand at 4786.782 kb on + strand at 4786.783 kb on - strand at 4786.909 kb on + strand, within LU632_RS25155 at 4786.909 kb on + strand, within LU632_RS25155 at 4786.948 kb on - strand, within LU632_RS25155 at 4787.336 kb on + strand at 4787.357 kb on + strand at 4787.484 kb on + strand at 4787.579 kb on - strand, within LU632_RS25160 at 4787.594 kb on + strand, within LU632_RS25160 at 4787.595 kb on - strand, within LU632_RS25160 at 4787.595 kb on - strand, within LU632_RS25160 at 4787.598 kb on + strand, within LU632_RS25160 at 4787.599 kb on - strand, within LU632_RS25160 at 4787.599 kb on - strand, within LU632_RS25160 at 4787.650 kb on + strand, within LU632_RS25160 at 4787.748 kb on + strand, within LU632_RS25160
Per-strain Table
Position Strand Gene LocusTag Fraction MJM9 remove 4,785,473 - LU632_RS25145 0.40 +0.9 4,785,475 + LU632_RS25145 0.40 +0.9 4,785,520 + LU632_RS25145 0.43 +0.9 4,785,592 + LU632_RS25145 0.48 -0.4 4,785,593 - LU632_RS25145 0.48 -0.6 4,785,593 - LU632_RS25145 0.48 -0.1 4,785,628 - LU632_RS25145 0.50 -1.2 4,785,669 + LU632_RS25145 0.53 -0.0 4,785,669 + LU632_RS25145 0.53 -0.2 4,785,796 + LU632_RS25145 0.61 +0.4 4,785,796 + LU632_RS25145 0.61 -0.4 4,785,797 - LU632_RS25145 0.61 -0.2 4,785,797 - LU632_RS25145 0.61 +0.1 4,785,797 - LU632_RS25145 0.61 -1.1 4,785,987 - LU632_RS25145 0.74 +0.4 4,786,048 + LU632_RS25145 0.78 -0.9 4,786,132 - LU632_RS25145 0.83 -0.7 4,786,276 + +0.4 4,786,277 - -0.2 4,786,277 - -0.4 4,786,277 - -0.8 4,786,336 - -0.4 4,786,429 + LU632_RS25150 0.10 +0.2 4,786,429 + LU632_RS25150 0.10 +0.3 4,786,430 - LU632_RS25150 0.10 +1.2 4,786,430 - LU632_RS25150 0.10 +0.8 4,786,527 + LU632_RS25150 0.38 +0.9 4,786,527 + LU632_RS25150 0.38 -0.3 4,786,528 - LU632_RS25150 0.38 +0.3 4,786,740 + +0.2 4,786,740 + +0.4 4,786,741 - -0.0 4,786,779 + +0.9 4,786,782 + +0.7 4,786,783 - -0.6 4,786,909 + LU632_RS25155 0.33 -0.5 4,786,909 + LU632_RS25155 0.33 +0.8 4,786,948 - LU632_RS25155 0.41 +0.1 4,787,336 + +0.9 4,787,357 + +0.2 4,787,484 + +0.8 4,787,579 - LU632_RS25160 0.13 -0.5 4,787,594 + LU632_RS25160 0.14 +0.1 4,787,595 - LU632_RS25160 0.14 -0.3 4,787,595 - LU632_RS25160 0.14 +0.1 4,787,598 + LU632_RS25160 0.14 +0.9 4,787,599 - LU632_RS25160 0.14 +0.3 4,787,599 - LU632_RS25160 0.14 +0.2 4,787,650 + LU632_RS25160 0.17 -0.1 4,787,748 + LU632_RS25160 0.22 +0.2
Or see this region's nucleotide sequence