Experiment: MJM9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rffA and rffC are separated by 4 nucleotides rffC and wecC overlap by 4 nucleotides
LU632_RS24225: rffA - dTDP-4-amino-4,6-dideoxygalactose transaminase, at 4,620,112 to 4,621,242
rffA
LU632_RS24230: rffC - dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase, at 4,621,247 to 4,621,957
rffC
LU632_RS24235: wecC - UDP-N-acetyl-D-mannosamine dehydrogenase, at 4,621,954 to 4,623,216
wecC
Position (kb) 4621
4622 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4620.281 kb on + strand, within rffA at 4620.281 kb on + strand, within rffA at 4620.281 kb on + strand, within rffA at 4620.281 kb on + strand, within rffA at 4620.282 kb on - strand, within rffA at 4620.282 kb on - strand, within rffA at 4620.282 kb on - strand, within rffA at 4620.322 kb on - strand, within rffA at 4620.369 kb on + strand, within rffA at 4620.369 kb on + strand, within rffA at 4620.370 kb on - strand, within rffA at 4620.370 kb on - strand, within rffA at 4620.370 kb on - strand, within rffA at 4620.370 kb on - strand, within rffA at 4620.412 kb on + strand, within rffA at 4620.452 kb on + strand, within rffA at 4620.452 kb on + strand, within rffA at 4620.453 kb on - strand, within rffA at 4620.518 kb on + strand, within rffA at 4620.518 kb on + strand, within rffA at 4620.545 kb on + strand, within rffA at 4620.546 kb on - strand, within rffA at 4620.572 kb on + strand, within rffA at 4620.572 kb on + strand, within rffA at 4620.572 kb on + strand, within rffA at 4620.573 kb on - strand, within rffA at 4620.573 kb on - strand, within rffA at 4620.576 kb on + strand, within rffA at 4620.577 kb on - strand, within rffA at 4620.577 kb on - strand, within rffA at 4620.693 kb on + strand, within rffA at 4620.693 kb on + strand, within rffA at 4620.696 kb on - strand, within rffA at 4620.761 kb on + strand, within rffA at 4620.809 kb on + strand, within rffA at 4620.810 kb on - strand, within rffA at 4620.810 kb on - strand, within rffA at 4620.902 kb on - strand, within rffA at 4620.976 kb on + strand, within rffA at 4620.976 kb on + strand, within rffA at 4621.005 kb on + strand, within rffA at 4621.005 kb on + strand, within rffA at 4621.007 kb on + strand, within rffA at 4621.008 kb on - strand, within rffA at 4621.102 kb on - strand, within rffA at 4621.194 kb on + strand at 4621.194 kb on + strand at 4621.194 kb on + strand at 4621.194 kb on + strand at 4621.195 kb on - strand at 4621.196 kb on + strand at 4621.197 kb on - strand at 4621.197 kb on - strand at 4621.197 kb on - strand at 4621.197 kb on - strand at 4621.230 kb on + strand at 4621.231 kb on - strand at 4621.242 kb on + strand at 4621.242 kb on + strand at 4621.242 kb on + strand at 4621.248 kb on + strand at 4621.254 kb on + strand at 4621.254 kb on + strand at 4621.254 kb on + strand at 4621.299 kb on + strand at 4621.388 kb on + strand, within rffC at 4621.388 kb on + strand, within rffC at 4621.389 kb on - strand, within rffC at 4621.389 kb on - strand, within rffC at 4621.389 kb on - strand, within rffC at 4621.393 kb on + strand, within rffC at 4621.393 kb on + strand, within rffC at 4621.393 kb on + strand, within rffC at 4621.393 kb on + strand, within rffC at 4621.393 kb on + strand, within rffC at 4621.394 kb on - strand, within rffC at 4621.600 kb on - strand, within rffC at 4621.812 kb on - strand, within rffC at 4621.934 kb on + strand at 4621.996 kb on - strand at 4622.148 kb on + strand, within wecC at 4622.271 kb on + strand, within wecC at 4622.397 kb on + strand, within wecC at 4622.455 kb on - strand, within wecC at 4622.497 kb on + strand, within wecC at 4622.599 kb on - strand, within wecC at 4622.750 kb on + strand, within wecC
Per-strain Table
Position Strand Gene LocusTag Fraction MJM9 remove 4,620,281 + rffA LU632_RS24225 0.15 +1.5 4,620,281 + rffA LU632_RS24225 0.15 +1.8 4,620,281 + rffA LU632_RS24225 0.15 -0.1 4,620,281 + rffA LU632_RS24225 0.15 +0.1 4,620,282 - rffA LU632_RS24225 0.15 -0.4 4,620,282 - rffA LU632_RS24225 0.15 +0.0 4,620,282 - rffA LU632_RS24225 0.15 -1.3 4,620,322 - rffA LU632_RS24225 0.19 -0.6 4,620,369 + rffA LU632_RS24225 0.23 +0.9 4,620,369 + rffA LU632_RS24225 0.23 -0.1 4,620,370 - rffA LU632_RS24225 0.23 -0.6 4,620,370 - rffA LU632_RS24225 0.23 -0.0 4,620,370 - rffA LU632_RS24225 0.23 -0.4 4,620,370 - rffA LU632_RS24225 0.23 +0.1 4,620,412 + rffA LU632_RS24225 0.27 +0.9 4,620,452 + rffA LU632_RS24225 0.30 +0.5 4,620,452 + rffA LU632_RS24225 0.30 -0.7 4,620,453 - rffA LU632_RS24225 0.30 -0.6 4,620,518 + rffA LU632_RS24225 0.36 +0.4 4,620,518 + rffA LU632_RS24225 0.36 -0.9 4,620,545 + rffA LU632_RS24225 0.38 -0.3 4,620,546 - rffA LU632_RS24225 0.38 +0.5 4,620,572 + rffA LU632_RS24225 0.41 -1.6 4,620,572 + rffA LU632_RS24225 0.41 -1.4 4,620,572 + rffA LU632_RS24225 0.41 +1.2 4,620,573 - rffA LU632_RS24225 0.41 +1.1 4,620,573 - rffA LU632_RS24225 0.41 +0.0 4,620,576 + rffA LU632_RS24225 0.41 -0.1 4,620,577 - rffA LU632_RS24225 0.41 +0.6 4,620,577 - rffA LU632_RS24225 0.41 -0.3 4,620,693 + rffA LU632_RS24225 0.51 +0.4 4,620,693 + rffA LU632_RS24225 0.51 -0.2 4,620,696 - rffA LU632_RS24225 0.52 -0.8 4,620,761 + rffA LU632_RS24225 0.57 -2.1 4,620,809 + rffA LU632_RS24225 0.62 -0.3 4,620,810 - rffA LU632_RS24225 0.62 -0.4 4,620,810 - rffA LU632_RS24225 0.62 +0.5 4,620,902 - rffA LU632_RS24225 0.70 -0.1 4,620,976 + rffA LU632_RS24225 0.76 +0.7 4,620,976 + rffA LU632_RS24225 0.76 +0.5 4,621,005 + rffA LU632_RS24225 0.79 +0.5 4,621,005 + rffA LU632_RS24225 0.79 -1.0 4,621,007 + rffA LU632_RS24225 0.79 -0.3 4,621,008 - rffA LU632_RS24225 0.79 -0.5 4,621,102 - rffA LU632_RS24225 0.88 +0.3 4,621,194 + +0.3 4,621,194 + -0.6 4,621,194 + -1.2 4,621,194 + -0.0 4,621,195 - +0.4 4,621,196 + -1.1 4,621,197 - -0.8 4,621,197 - +0.9 4,621,197 - +2.5 4,621,197 - +0.2 4,621,230 + -1.2 4,621,231 - -1.0 4,621,242 + +0.6 4,621,242 + -1.0 4,621,242 + -0.1 4,621,248 + +0.2 4,621,254 + -0.7 4,621,254 + +0.9 4,621,254 + -0.5 4,621,299 + +0.9 4,621,388 + rffC LU632_RS24230 0.20 -0.6 4,621,388 + rffC LU632_RS24230 0.20 -0.8 4,621,389 - rffC LU632_RS24230 0.20 -0.6 4,621,389 - rffC LU632_RS24230 0.20 +0.6 4,621,389 - rffC LU632_RS24230 0.20 -1.0 4,621,393 + rffC LU632_RS24230 0.21 -0.4 4,621,393 + rffC LU632_RS24230 0.21 +0.5 4,621,393 + rffC LU632_RS24230 0.21 +0.2 4,621,393 + rffC LU632_RS24230 0.21 +0.9 4,621,393 + rffC LU632_RS24230 0.21 -0.1 4,621,394 - rffC LU632_RS24230 0.21 -0.8 4,621,600 - rffC LU632_RS24230 0.50 +0.1 4,621,812 - rffC LU632_RS24230 0.79 -1.5 4,621,934 + +1.0 4,621,996 - +1.4 4,622,148 + wecC LU632_RS24235 0.15 +1.9 4,622,271 + wecC LU632_RS24235 0.25 -1.3 4,622,397 + wecC LU632_RS24235 0.35 -0.2 4,622,455 - wecC LU632_RS24235 0.40 -0.2 4,622,497 + wecC LU632_RS24235 0.43 +0.5 4,622,599 - wecC LU632_RS24235 0.51 -2.1 4,622,750 + wecC LU632_RS24235 0.63 -0.6
Or see this region's nucleotide sequence