Experiment: MJM9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rplB and rplW are separated by 17 nucleotides rplW and rplD overlap by 4 nucleotides rplD and rplC are separated by 10 nucleotides rplC and rpsJ are separated by 32 nucleotides rpsJ and LU632_RS22665 are separated by 266 nucleotides
LU632_RS22640: rplB - 50S ribosomal protein L2, at 4,313,956 to 4,314,777
rplB
LU632_RS22645: rplW - 50S ribosomal protein L23, at 4,314,795 to 4,315,097
rplW
LU632_RS22650: rplD - 50S ribosomal protein L4, at 4,315,094 to 4,315,699
rplD
LU632_RS22655: rplC - 50S ribosomal protein L3, at 4,315,710 to 4,316,339
rplC
LU632_RS22660: rpsJ - 30S ribosomal protein S10, at 4,316,372 to 4,316,683
rpsJ
LU632_RS22665: LU632_RS22665 - hypothetical protein, at 4,316,950 to 4,317,363
_RS22665
Position (kb) 4315
4316
4317 Strain fitness (log2 ratio) -1
0
1 at 4316.944 kb on - strand at 4317.003 kb on + strand, within LU632_RS22665 at 4317.014 kb on + strand, within LU632_RS22665 at 4317.066 kb on + strand, within LU632_RS22665 at 4317.241 kb on + strand, within LU632_RS22665 at 4317.241 kb on + strand, within LU632_RS22665 at 4317.241 kb on + strand, within LU632_RS22665 at 4317.242 kb on - strand, within LU632_RS22665 at 4317.242 kb on - strand, within LU632_RS22665 at 4317.292 kb on - strand, within LU632_RS22665 at 4317.293 kb on + strand, within LU632_RS22665
Per-strain Table
Position Strand Gene LocusTag Fraction MJM9 remove 4,316,944 - +0.2 4,317,003 + LU632_RS22665 0.13 -0.3 4,317,014 + LU632_RS22665 0.15 +0.0 4,317,066 + LU632_RS22665 0.28 -1.3 4,317,241 + LU632_RS22665 0.70 +0.4 4,317,241 + LU632_RS22665 0.70 -0.9 4,317,241 + LU632_RS22665 0.70 +0.2 4,317,242 - LU632_RS22665 0.71 -0.2 4,317,242 - LU632_RS22665 0.71 +0.0 4,317,292 - LU632_RS22665 0.83 -0.3 4,317,293 + LU632_RS22665 0.83 -0.5
Or see this region's nucleotide sequence