Experiment: MJM9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt argF and rraB are separated by 157 nucleotides rraB and LU632_RS20910 are separated by 109 nucleotides LU632_RS20910 and LU632_RS20915 are separated by 76 nucleotides LU632_RS20915 and LU632_RS20920 are separated by 24 nucleotides
LU632_RS20900: argF - ornithine carbamoyltransferase, at 3,994,205 to 3,995,215
argF
LU632_RS20905: rraB - ribonuclease E inhibitor RraB, at 3,995,373 to 3,995,789
rraB
LU632_RS20910: LU632_RS20910 - tRNA isopentenyl-2-thiomethyl-A-37 hydroxylase MiaE, at 3,995,899 to 3,996,662
_RS20910
LU632_RS20915: LU632_RS20915 - IS1 family transposase, at 3,996,739 to 3,997,436
_RS20915
LU632_RS20920: LU632_RS20920 - phosphoglycerate mutase family protein, at 3,997,461 to 3,997,922
_RS20920
Position (kb) 3995
3996
3997 Strain fitness (log2 ratio) -2
-1
0
1 at 3994.914 kb on + strand, within argF at 3994.914 kb on + strand, within argF at 3994.914 kb on + strand, within argF at 3994.914 kb on + strand, within argF at 3994.914 kb on + strand, within argF at 3994.914 kb on + strand, within argF at 3994.915 kb on - strand, within argF at 3994.915 kb on - strand, within argF at 3994.915 kb on - strand, within argF at 3994.915 kb on - strand, within argF at 3994.915 kb on - strand, within argF at 3994.915 kb on - strand, within argF at 3994.915 kb on - strand, within argF at 3994.989 kb on + strand, within argF at 3994.989 kb on + strand, within argF at 3995.290 kb on - strand at 3995.318 kb on + strand at 3995.328 kb on + strand at 3995.328 kb on + strand at 3995.466 kb on + strand, within rraB at 3995.466 kb on + strand, within rraB at 3995.469 kb on - strand, within rraB at 3995.471 kb on + strand, within rraB at 3995.695 kb on - strand, within rraB at 3995.695 kb on - strand, within rraB at 3995.712 kb on + strand, within rraB at 3995.712 kb on + strand, within rraB at 3995.712 kb on + strand, within rraB at 3995.713 kb on - strand, within rraB at 3995.747 kb on + strand, within rraB at 3995.748 kb on - strand at 3995.898 kb on + strand at 3995.994 kb on - strand, within LU632_RS20910 at 3995.999 kb on + strand, within LU632_RS20910 at 3996.067 kb on + strand, within LU632_RS20910 at 3996.068 kb on - strand, within LU632_RS20910 at 3996.098 kb on + strand, within LU632_RS20910 at 3996.144 kb on + strand, within LU632_RS20910 at 3996.245 kb on + strand, within LU632_RS20910 at 3996.245 kb on + strand, within LU632_RS20910 at 3996.246 kb on - strand, within LU632_RS20910 at 3996.306 kb on + strand, within LU632_RS20910 at 3996.362 kb on + strand, within LU632_RS20910 at 3996.362 kb on + strand, within LU632_RS20910 at 3996.362 kb on + strand, within LU632_RS20910 at 3996.362 kb on + strand, within LU632_RS20910 at 3996.399 kb on + strand, within LU632_RS20910 at 3996.399 kb on + strand, within LU632_RS20910 at 3996.399 kb on + strand, within LU632_RS20910 at 3996.400 kb on - strand, within LU632_RS20910 at 3996.400 kb on - strand, within LU632_RS20910 at 3996.400 kb on - strand, within LU632_RS20910 at 3996.400 kb on - strand, within LU632_RS20910 at 3996.412 kb on + strand, within LU632_RS20910 at 3996.563 kb on + strand, within LU632_RS20910 at 3996.649 kb on + strand at 3997.500 kb on - strand at 3997.569 kb on - strand, within LU632_RS20920 at 3997.577 kb on + strand, within LU632_RS20920
Per-strain Table
Position Strand Gene LocusTag Fraction MJM9 remove 3,994,914 + argF LU632_RS20900 0.70 -0.5 3,994,914 + argF LU632_RS20900 0.70 -2.4 3,994,914 + argF LU632_RS20900 0.70 -0.1 3,994,914 + argF LU632_RS20900 0.70 -0.3 3,994,914 + argF LU632_RS20900 0.70 -0.7 3,994,914 + argF LU632_RS20900 0.70 -1.2 3,994,915 - argF LU632_RS20900 0.70 -0.3 3,994,915 - argF LU632_RS20900 0.70 +0.9 3,994,915 - argF LU632_RS20900 0.70 -0.0 3,994,915 - argF LU632_RS20900 0.70 -0.1 3,994,915 - argF LU632_RS20900 0.70 -0.9 3,994,915 - argF LU632_RS20900 0.70 -0.6 3,994,915 - argF LU632_RS20900 0.70 +0.1 3,994,989 + argF LU632_RS20900 0.78 -0.1 3,994,989 + argF LU632_RS20900 0.78 +0.4 3,995,290 - +0.1 3,995,318 + -0.1 3,995,328 + +0.2 3,995,328 + -1.0 3,995,466 + rraB LU632_RS20905 0.22 -0.7 3,995,466 + rraB LU632_RS20905 0.22 -0.0 3,995,469 - rraB LU632_RS20905 0.23 -1.3 3,995,471 + rraB LU632_RS20905 0.24 -0.1 3,995,695 - rraB LU632_RS20905 0.77 -1.1 3,995,695 - rraB LU632_RS20905 0.77 -0.1 3,995,712 + rraB LU632_RS20905 0.81 +0.9 3,995,712 + rraB LU632_RS20905 0.81 -1.4 3,995,712 + rraB LU632_RS20905 0.81 +0.3 3,995,713 - rraB LU632_RS20905 0.82 +0.4 3,995,747 + rraB LU632_RS20905 0.90 -0.1 3,995,748 - +0.9 3,995,898 + +0.3 3,995,994 - LU632_RS20910 0.12 +0.1 3,995,999 + LU632_RS20910 0.13 -0.9 3,996,067 + LU632_RS20910 0.22 -0.0 3,996,068 - LU632_RS20910 0.22 -0.5 3,996,098 + LU632_RS20910 0.26 -0.4 3,996,144 + LU632_RS20910 0.32 -0.8 3,996,245 + LU632_RS20910 0.45 +0.3 3,996,245 + LU632_RS20910 0.45 -0.6 3,996,246 - LU632_RS20910 0.45 +0.1 3,996,306 + LU632_RS20910 0.53 +0.3 3,996,362 + LU632_RS20910 0.61 -0.7 3,996,362 + LU632_RS20910 0.61 +0.0 3,996,362 + LU632_RS20910 0.61 +1.1 3,996,362 + LU632_RS20910 0.61 +0.0 3,996,399 + LU632_RS20910 0.65 +0.1 3,996,399 + LU632_RS20910 0.65 -0.9 3,996,399 + LU632_RS20910 0.65 -0.3 3,996,400 - LU632_RS20910 0.66 +0.3 3,996,400 - LU632_RS20910 0.66 +0.1 3,996,400 - LU632_RS20910 0.66 -0.8 3,996,400 - LU632_RS20910 0.66 +1.3 3,996,412 + LU632_RS20910 0.67 -0.8 3,996,563 + LU632_RS20910 0.87 -0.4 3,996,649 + -0.9 3,997,500 - -1.4 3,997,569 - LU632_RS20920 0.23 -0.1 3,997,577 + LU632_RS20920 0.25 -0.3
Or see this region's nucleotide sequence