Experiment: MJM9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gntR and gntK are separated by 182 nucleotides gntK and gntU are separated by 9 nucleotides
LU632_RS19160: gntR - gluconate operon transcriptional repressor GntR, at 3,621,551 to 3,622,546
gntR
LU632_RS19165: gntK - gluconokinase, at 3,622,729 to 3,623,262
gntK
LU632_RS19170: gntU - gluconate transporter, at 3,623,272 to 3,624,612
gntU
Position (kb) 3622
3623
3624 Strain fitness (log2 ratio) -2
-1
0
1
2 at 3622.077 kb on + strand, within gntR at 3622.078 kb on - strand, within gntR at 3622.151 kb on + strand, within gntR at 3622.286 kb on - strand, within gntR at 3622.419 kb on + strand, within gntR at 3622.554 kb on + strand at 3622.554 kb on + strand at 3622.640 kb on + strand at 3622.640 kb on + strand at 3622.728 kb on + strand at 3622.728 kb on + strand at 3622.728 kb on + strand at 3622.728 kb on + strand at 3622.728 kb on + strand at 3622.728 kb on + strand at 3622.728 kb on - strand at 3622.730 kb on - strand at 3622.734 kb on + strand at 3622.734 kb on + strand at 3622.734 kb on + strand at 3622.734 kb on + strand at 3622.735 kb on - strand at 3622.836 kb on + strand, within gntK at 3622.837 kb on - strand, within gntK at 3622.962 kb on + strand, within gntK at 3622.962 kb on + strand, within gntK at 3622.966 kb on - strand, within gntK at 3623.260 kb on + strand at 3623.271 kb on + strand at 3623.271 kb on + strand at 3623.271 kb on + strand at 3623.272 kb on - strand at 3623.272 kb on - strand at 3623.272 kb on - strand at 3623.272 kb on - strand at 3623.272 kb on - strand at 3623.415 kb on + strand, within gntU at 3623.579 kb on - strand, within gntU at 3623.579 kb on - strand, within gntU at 3623.579 kb on - strand, within gntU at 3623.838 kb on + strand, within gntU at 3623.839 kb on - strand, within gntU at 3623.892 kb on + strand, within gntU at 3623.893 kb on - strand, within gntU at 3623.934 kb on + strand, within gntU at 3624.039 kb on - strand, within gntU at 3624.039 kb on - strand, within gntU at 3624.040 kb on + strand, within gntU at 3624.041 kb on - strand, within gntU at 3624.041 kb on - strand, within gntU at 3624.106 kb on + strand, within gntU at 3624.107 kb on - strand, within gntU at 3624.107 kb on - strand, within gntU at 3624.107 kb on - strand, within gntU
Per-strain Table
Position Strand Gene LocusTag Fraction MJM9 remove 3,622,077 + gntR LU632_RS19160 0.53 +1.9 3,622,078 - gntR LU632_RS19160 0.53 -0.1 3,622,151 + gntR LU632_RS19160 0.60 +0.9 3,622,286 - gntR LU632_RS19160 0.74 -0.6 3,622,419 + gntR LU632_RS19160 0.87 +0.5 3,622,554 + +0.9 3,622,554 + -0.8 3,622,640 + -0.4 3,622,640 + +0.0 3,622,728 + -0.6 3,622,728 + +0.7 3,622,728 + -0.4 3,622,728 + +0.1 3,622,728 + -0.2 3,622,728 + -0.3 3,622,728 - +0.1 3,622,730 - +0.6 3,622,734 + -0.6 3,622,734 + -0.4 3,622,734 + +1.0 3,622,734 + +1.1 3,622,735 - +1.7 3,622,836 + gntK LU632_RS19165 0.20 -0.1 3,622,837 - gntK LU632_RS19165 0.20 -0.4 3,622,962 + gntK LU632_RS19165 0.44 -0.5 3,622,962 + gntK LU632_RS19165 0.44 -0.4 3,622,966 - gntK LU632_RS19165 0.44 -0.5 3,623,260 + +0.9 3,623,271 + +0.1 3,623,271 + +0.1 3,623,271 + -0.2 3,623,272 - +0.0 3,623,272 - +0.3 3,623,272 - -0.3 3,623,272 - -0.4 3,623,272 - +0.2 3,623,415 + gntU LU632_RS19170 0.11 +0.6 3,623,579 - gntU LU632_RS19170 0.23 -0.7 3,623,579 - gntU LU632_RS19170 0.23 +0.1 3,623,579 - gntU LU632_RS19170 0.23 -0.6 3,623,838 + gntU LU632_RS19170 0.42 -0.4 3,623,839 - gntU LU632_RS19170 0.42 +0.6 3,623,892 + gntU LU632_RS19170 0.46 -0.9 3,623,893 - gntU LU632_RS19170 0.46 +0.1 3,623,934 + gntU LU632_RS19170 0.49 -0.6 3,624,039 - gntU LU632_RS19170 0.57 -1.7 3,624,039 - gntU LU632_RS19170 0.57 +0.2 3,624,040 + gntU LU632_RS19170 0.57 -1.4 3,624,041 - gntU LU632_RS19170 0.57 -0.3 3,624,041 - gntU LU632_RS19170 0.57 -2.7 3,624,106 + gntU LU632_RS19170 0.62 +0.3 3,624,107 - gntU LU632_RS19170 0.62 +1.9 3,624,107 - gntU LU632_RS19170 0.62 -1.1 3,624,107 - gntU LU632_RS19170 0.62 -0.1
Or see this region's nucleotide sequence